Protein Info for MPMX19_03035 in Azospirillum sp. SherDot2

Annotation: Protein YceI

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 194 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF04264: YceI" amino acids 29 to 191 (163 residues), 180.7 bits, see alignment E=1.2e-57

Best Hits

Swiss-Prot: 39% identical to Y1782_PECAS: UPF0312 protein ECA1782 (ECA1782) from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)

KEGG orthology group: None (inferred from 94% identity to azl:AZL_b00120)

Predicted SEED Role

"Protein yceI precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (194 amino acids)

>MPMX19_03035 Protein YceI (Azospirillum sp. SherDot2)
MKKTLFAAALFAATAVGAVSPAFAAPVSYKIDPAHTAVAFIVNHVGFSNVIGRFNTVGGD
ISFDKDAVEKSTVSVTIDTTSVDTNHAKRDEHLRSPDFFNAKEFPKMTFKSTKIEKTGDK
TGKLHGELTMLGVTKPVVLDVTFNKDGVSPASKLETAGFSARGTVKRTDFGMKYGAPAIG
DDIQLLIEIEAVKS