Protein Info for MPMX19_03014 in Azospirillum sp. SherDot2

Annotation: Transcriptional activatory protein AadR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 transmembrane" amino acids 96 to 112 (17 residues), see Phobius details PF00027: cNMP_binding" amino acids 55 to 137 (83 residues), 61.4 bits, see alignment E=1e-20 PF13545: HTH_Crp_2" amino acids 171 to 250 (80 residues), 66.9 bits, see alignment E=1.9e-22 PF00325: Crp" amino acids 200 to 231 (32 residues), 44 bits, see alignment 2.1e-15

Best Hits

KEGG orthology group: None (inferred from 86% identity to azl:AZL_b06280)

Predicted SEED Role

"transcriptional regulator, Crp/Fnr family" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (254 amino acids)

>MPMX19_03014 Transcriptional activatory protein AadR (Azospirillum sp. SherDot2)
MSTHAAIAAHANRAVPGYLVSALAMTPSAGLGAGVGAAIQPRNPADPLASLGHAKVYERE
TTVFTEGDAAGSVFRVMSGMVRLYKMLPDGRRQIIGFLQAGDMMGLAFAAQYLYTAETVT
ATTIQRIPRLELDALMDAQPAFARKLLSATTSELMAAQDQMVLLGRKTAAEKVATFLLRL
SDRKCGGKGDGKGDDRTIDLPMGRSDIADHLGLTTETVSRTLTKLKSSRLIRILVGGKLD
LLDRDALADLAGGF