Protein Info for MPMX19_02986 in Azospirillum sp. SherDot2
Annotation: Inner membrane ABC transporter permease protein YdcV
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K02053, putative spermidine/putrescine transport system permease protein (inferred from 72% identity to vei:Veis_0203)Predicted SEED Role
"ABC-type spermidine/putrescine transport system, permease component II"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (266 amino acids)
>MPMX19_02986 Inner membrane ABC transporter permease protein YdcV (Azospirillum sp. SherDot2) MNRNGPIALIFHVLFLGFLLAPILIVCAVAFTSQGYLSLPTEGLSLRWFRAIGDNPEFIR AFKDSLLLGAVSSTLAILVAVPAALAIARHQFFGREAIQALFLSPLMVPHIVLGIAFLRF FTMIGLGGTFAGLVLSHVIIILPFALRLILAASTGMDRAVENAAASLGASSWTCFRRVTL PLILPGVASGWVLAFINSFDEVTMTVFIASPETTTLPVRLFLYIQDNIDPLVAAVSAVLI FLTVAAMLVLDRVYGLERLLVGKGRD