Protein Info for MPMX19_02979 in Azospirillum sp. SherDot2

Annotation: Hydrogen cyanide synthase subunit HcnB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 485 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF07992: Pyr_redox_2" amino acids 8 to 333 (326 residues), 68 bits, see alignment E=3.4e-22 PF03486: HI0933_like" amino acids 8 to 46 (39 residues), 25.5 bits, see alignment 1.9e-09 PF12831: FAD_oxidored" amino acids 9 to 52 (44 residues), 35.4 bits, see alignment 2.9e-12 PF00890: FAD_binding_2" amino acids 9 to 47 (39 residues), 24 bits, see alignment 7.4e-09 PF13450: NAD_binding_8" amino acids 12 to 68 (57 residues), 39.1 bits, see alignment 2.6e-13 PF04324: Fer2_BFD" amino acids 391 to 442 (52 residues), 35.5 bits, see alignment 3.7e-12 PF17806: SO_alpha_A3" amino acids 392 to 471 (80 residues), 33.1 bits, see alignment E=2e-11

Best Hits

KEGG orthology group: None (inferred from 59% identity to bbr:BB0992)

Predicted SEED Role

"Opine oxidase subunit A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (485 amino acids)

>MPMX19_02979 Hydrogen cyanide synthase subunit HcnB (Azospirillum sp. SherDot2)
MSAPKFDFDIAVVGSGPAGLAAAALAASKGASVVLLDEQTEPGGQIYRAVTETPVRDRKV
LGPDYWHGAELLGPLRDSGAVHWPGTIVWSVARPREDAADGHRPIQIGLSRNGSAAMLTV
RHVILATGALERPFPIPGWTLPGVLGAGAAQVLLKTSGLVPSGATVMAGSGPLLWLLAWQ
YLQAGVRIDAILDTTPKENWRAALPLLPGFLRSPYLGKGMKLMLEVRRKLTVIGNVTALR
AEGAIGGDSALKSVVYTRNGTEHRLPADTLLLHHGVVPNLNLANATGCAQRWDEQQRCWR
PTTDEWGATSVEGVSLAGDGAGIGGARAAEEAGRLAALDALHRLGRIGREQRDQAAAPFR
AALDRALTGRAFLDTLYTPAEAFRVPADNTIVCRCEEITAGAVREAVRLGCSGPNQAKSF
LRCGMGPCQGRLCGPTVTEVIAAERGVSPAEVGYYRLRPPVKPITLAELAALPKTDADID
AVFKH