Protein Info for MPMX19_02971 in Azospirillum sp. SherDot2

Annotation: Sialic acid TRAP transporter permease protein SiaT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 631 transmembrane" amino acids 35 to 60 (26 residues), see Phobius details amino acids 72 to 89 (18 residues), see Phobius details amino acids 110 to 132 (23 residues), see Phobius details amino acids 152 to 173 (22 residues), see Phobius details amino acids 180 to 199 (20 residues), see Phobius details amino acids 208 to 253 (46 residues), see Phobius details amino acids 259 to 278 (20 residues), see Phobius details amino acids 289 to 313 (25 residues), see Phobius details amino acids 373 to 398 (26 residues), see Phobius details amino acids 418 to 438 (21 residues), see Phobius details amino acids 444 to 464 (21 residues), see Phobius details amino acids 476 to 500 (25 residues), see Phobius details amino acids 520 to 552 (33 residues), see Phobius details amino acids 564 to 584 (21 residues), see Phobius details amino acids 604 to 629 (26 residues), see Phobius details PF04290: DctQ" amino acids 49 to 176 (128 residues), 95 bits, see alignment E=3.5e-31 PF06808: DctM" amino acids 216 to 624 (409 residues), 340.6 bits, see alignment E=1.3e-105 TIGR00786: TRAP transporter, DctM subunit" amino acids 225 to 626 (402 residues), 290.3 bits, see alignment E=1.1e-90

Best Hits

KEGG orthology group: None (inferred from 79% identity to pol:Bpro_0034)

Predicted SEED Role

"Predicted gluconate TRAP family transporter, DctM subunit" in subsystem D-gluconate and ketogluconates metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (631 amino acids)

>MPMX19_02971 Sialic acid TRAP transporter permease protein SiaT (Azospirillum sp. SherDot2)
MSHMSEPVHGFAEAPGALGAGGSSLLRRIDHGLSVGVEVVAGLLVLVEIVVLLAGVTARY
LFHTPLVWSDELASILFLWLSMLGAVVALRRGEHMRMTGLVSRVGPQARSLLECIAITAP
IAFLTLVLYHAVDYAMEEQFITTPAMEISNAWRASALPVGLGLMLVAALFRLLRVAKPMT
VLAAALVTGAIVAGFWVAGPMLKPLGQLNLIIFFVGLVAANVFAGVPIAFSFALATFSYL
ALTTSTPLLVMVGRLDEGMSHLILLAVPLFVFLGLLIEMTGMARAMIQFLASLLGHVRGG
LSYVLIGAMYLVSGISGSKIADMAAIAPVLFPEMKKRGAPPGDLVALLSATGAQTETIPP
SIVLITIGSVTGVSIAALFTGGMLPGVVLGACLCFVVWRRYRNEDLSHVERTPGREIGRL
AMVALPAILLPFVIRAAVVEGIATATEVSTIGIAYSTIAGLLIYRQFDWRRLKPMLIETA
SLTGAIIFIVGCATSMAWGLTQSGFSSDLARFMAGIPGGAYGFLAISIVAFIILGSVLEG
IPAIVLFGPLLFPIARAAGVHEVHYAMVVIFAMGIGLFAPPFGVGYYGACAISKVNPDDG
LKHIWGYVGALLVGLVIVAAIPWISTGFLAR