Protein Info for MPMX19_02961 in Azospirillum sp. SherDot2

Annotation: Putative pyrimidine permease RutG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 transmembrane" amino acids 44 to 44 (1 residues), see Phobius details amino acids 46 to 48 (3 residues), see Phobius details amino acids 54 to 72 (19 residues), see Phobius details amino acids 78 to 97 (20 residues), see Phobius details amino acids 105 to 127 (23 residues), see Phobius details amino acids 137 to 157 (21 residues), see Phobius details amino acids 167 to 187 (21 residues), see Phobius details amino acids 194 to 215 (22 residues), see Phobius details amino acids 239 to 259 (21 residues), see Phobius details amino acids 281 to 300 (20 residues), see Phobius details amino acids 311 to 333 (23 residues), see Phobius details amino acids 344 to 368 (25 residues), see Phobius details amino acids 388 to 420 (33 residues), see Phobius details TIGR00801: uracil-xanthine permease" amino acids 22 to 416 (395 residues), 313.2 bits, see alignment E=1.5e-97 PF00860: Xan_ur_permease" amino acids 26 to 397 (372 residues), 287 bits, see alignment E=1e-89

Best Hits

Swiss-Prot: 60% identical to RUTG_ECOLI: Putative pyrimidine permease RutG (rutG) from Escherichia coli (strain K12)

KEGG orthology group: K02824, uracil permease (inferred from 93% identity to azl:AZL_b05900)

MetaCyc: 60% identical to pyrimidine:H+ symporter (Escherichia coli K-12 substr. MG1655)
RXN-5076; TRANS-RXN-132; TRANS-RXN-362

Predicted SEED Role

"Uracil permease" in subsystem De Novo Pyrimidine Synthesis or Pyrimidine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (441 amino acids)

>MPMX19_02961 Putative pyrimidine permease RutG (Azospirillum sp. SherDot2)
MADFFPRWPLATGPVVQPDERLPWGSTLTLGVQHLVAMSGSTILGPLLMGFDPNLAVLFS
GIGTLLFLVLTAGRVPSYLGSSFSFIAVVIAVTGYSGQGPNPNIGPALGGIIAAGVVYVL
IGLLVSYTSTSWIERLMPPAVTGAVGAAIGLNLSPVAVKGIEGSGPHILVALFTLVATAL
IAVYAPLAIRRVSILVGIASGYVFYVVLANGMGLLPPVSFAELDAAPWFGMPAFRTPTFD
AGAMALVAPIAFILVAENLGHIKAIGAMTGRNLDRFIGRGFIGDGIATIVSGSGGGTGVT
TYVENMGVMAVTRVFSTLIFVVAAVAAILLGFSPKFGALLRTIPAPVLGGLATVVFGLIA
AAMVRLWVDNRVDFSDPRNLITVGVTLVLGAGNFTVTAGGFSIGGIGTATIAALGLYQLL
GIGRPREAVRTASGTDGATLH