Protein Info for MPMX19_02864 in Azospirillum sp. SherDot2

Annotation: PKHD-type hydroxylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 228 PF13640: 2OG-FeII_Oxy_3" amino acids 83 to 176 (94 residues), 49.1 bits, see alignment E=8.9e-17 PF18331: PKHD_C" amino acids 184 to 227 (44 residues), 71 bits, see alignment 7e-24

Best Hits

Swiss-Prot: 68% identical to Y838_CUPMC: PKHD-type hydroxylase Rmet_0838 (Rmet_0838) from Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34)

KEGG orthology group: None (inferred from 68% identity to rme:Rmet_0838)

Predicted SEED Role

"Iron-uptake factor PiuC" in subsystem Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (228 amino acids)

>MPMX19_02864 PKHD-type hydroxylase (Azospirillum sp. SherDot2)
MLLQIPDILTADEIAQCRTVLEASPWVDGRVTAGDQAASAKRNLQIPEESDTARELGTVI
LRALARSPAFNSAALPLRVLPPMFNRYDHAMTYGYHVDNSIRAIPGTGGMRMRADVSTTI
FLSDPEEYEGGELIVEDTYGTRPVKLPAGHAVVYPSSSLHQVSPVTRGSRWASFFFTQSM
VRDDGLRAMLYDLDMAIIELRQELGDNHHAVLSLVNHYHNLLRRWAEV