Protein Info for MPMX19_02840 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 40 to 60 (21 residues), see Phobius details amino acids 71 to 93 (23 residues), see Phobius details amino acids 105 to 130 (26 residues), see Phobius details amino acids 136 to 159 (24 residues), see Phobius details amino acids 166 to 190 (25 residues), see Phobius details amino acids 197 to 217 (21 residues), see Phobius details amino acids 225 to 251 (27 residues), see Phobius details TIGR00808: malonate transporter, MadM subunit" amino acids 5 to 254 (250 residues), 384.9 bits, see alignment E=9.4e-120 PF03818: MadM" amino acids 7 to 253 (247 residues), 372.8 bits, see alignment E=4.3e-116

Best Hits

KEGG orthology group: None (inferred from 94% identity to azl:AZL_b03130)

Predicted SEED Role

"Malonate transporter, MadM subunit" in subsystem Malonate decarboxylase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (254 amino acids)

>MPMX19_02840 hypothetical protein (Azospirillum sp. SherDot2)
MLDKFMHEIAENQLVAAFAVVGIIVWVSNLLARHLTGGRVHGSAIAVLAGLALAYWGGLV
TGKTKGMADLTMFGGLALMGGAMMRDFCIVATASEVQIDEARKAGWLGFIGLFLGTVLPF
IVGVAVAMAFGYTDPVALTTIGAGAITYIVGPVTGAAIGASSDVMALSIATGVVKAILVM
VFTPVLAGFMRLDNPQAAMVFGGLAGTVSGVSAGLAATDRRLVPYGALVATFHTGLGCLM
GPSVLFLAIKAIVG