Protein Info for MPMX19_02805 in Azospirillum sp. SherDot2

Annotation: putative transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 transmembrane" amino acids 34 to 51 (18 residues), see Phobius details amino acids 71 to 89 (19 residues), see Phobius details amino acids 101 to 121 (21 residues), see Phobius details amino acids 124 to 145 (22 residues), see Phobius details amino acids 157 to 179 (23 residues), see Phobius details amino acids 184 to 204 (21 residues), see Phobius details amino acids 241 to 261 (21 residues), see Phobius details amino acids 268 to 289 (22 residues), see Phobius details amino acids 301 to 322 (22 residues), see Phobius details amino acids 328 to 352 (25 residues), see Phobius details amino acids 365 to 384 (20 residues), see Phobius details amino acids 390 to 412 (23 residues), see Phobius details PF07690: MFS_1" amino acids 39 to 338 (300 residues), 109.1 bits, see alignment E=2.4e-35 PF00083: Sugar_tr" amino acids 67 to 193 (127 residues), 39.4 bits, see alignment E=3.6e-14

Best Hits

Swiss-Prot: 38% identical to YDER_BACSU: Uncharacterized MFS-type transporter YdeR (ydeR) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 87% identity to azl:AZL_b03440)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (417 amino acids)

>MPMX19_02805 putative transporter (Azospirillum sp. SherDot2)
MTIIQTAHATPLASAMPSQGPLAPAHDGGMSRPLVFLMAAGTGLAAATLYYSQPMLGVLG
ADIGAADRTVGWVPTLTQLGYAFGILLLAPLGDRFDRRRIILAKVSVLVAALLAAGFAPS
IGGLLAASLVMGLSATLAQDIVPAAATLAPAEHRGRVVGTVMTGLLLGILLSRVVSGVIA
EQFGWRVVFVAAAGSIALLGAALWRGLPRFAPTTDLGYGELLGSLVTLWARHPGLRRAAM
AQGLLSLGFSAFWSTLAVMLHGAPFHLGAAAAGAFGLAGAAGALVAPIAGRIADSRGPAL
MTRLGAGLAVLSFAAMALSPLLPEGGRLWLLVASAVGFDLGVQASLIAHQTIVYGIDPAA
RSRLNAVLMVGMFIGMAAGATLGSQALAAWGWNGVVAVATAASAAALVLRFLTRSDR