Protein Info for MPMX19_02803 in Azospirillum sp. SherDot2

Annotation: putative FAD-linked oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 480 PF01565: FAD_binding_4" amino acids 42 to 179 (138 residues), 130.6 bits, see alignment E=3.5e-42 PF02913: FAD-oxidase_C" amino acids 218 to 475 (258 residues), 174.7 bits, see alignment E=2.9e-55

Best Hits

KEGG orthology group: None (inferred from 52% identity to bja:blr3885)

Predicted SEED Role

"D-2-hydroxyglutarate dehydrogenase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (480 amino acids)

>MPMX19_02803 putative FAD-linked oxidoreductase (Azospirillum sp. SherDot2)
MSGTEVVERARAILGPAHVLVGPVDTAPFLADWRGRYRGAALAVVRPADAAQVAAIVRLC
AETGTPLVPQGGNTGVVGGAIPDGSGRSLVLSLSRLTRIRDVDPIGDSLTVEAGCTLAAV
QAAAEEAGRLFPMSLGSEGSCQIGGTIATNAGGTAVLRYGPMRDLVLGLEVVLPDGTLWN
GLRSLRKDNTGYALKHLFIGAEGTLGIVTAATLKLFPRPQSVATGFLALPSLDAALQVFA
QLRAALGDRVSTAEILSESQLASVLAHVPGTARPLGTIMPWYLLVEVTDPMQGLDLAARL
EDLLSTGLEDGRIADAAVARSQAQANAMWKLRHSVSEANRKSGIVVGHDTAVPVARIPDF
VTRASAAIEAVRPDARVVAVGHIGDGNIHLVAILPESLRESLRASGEPLDRIAQAISAAV
HEQAIALGGTISAEHGIGQSMRDALAAFKGPAEMALMRGIKQLFDPQGVMNPGKVVAARH