Protein Info for MPMX19_02776 in Azospirillum sp. SherDot2

Annotation: High-affinity branched-chain amino acid transport system permease protein LivH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details amino acids 44 to 60 (17 residues), see Phobius details amino acids 63 to 85 (23 residues), see Phobius details amino acids 107 to 127 (21 residues), see Phobius details amino acids 147 to 172 (26 residues), see Phobius details amino acids 202 to 226 (25 residues), see Phobius details amino acids 239 to 263 (25 residues), see Phobius details amino acids 276 to 298 (23 residues), see Phobius details PF02653: BPD_transp_2" amino acids 11 to 289 (279 residues), 144.1 bits, see alignment E=2.3e-46

Best Hits

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (304 amino acids)

>MPMX19_02776 High-affinity branched-chain amino acid transport system permease protein LivH (Azospirillum sp. SherDot2)
MFDPYYLQQLAIGLSLGMTYALMAIGFTLIFGVLNVVNFAHGEIYTLGAFAGLVLISATA
PPIVAVILGALAIGALAGFSLERIAFKPFRRFTDEASLKSRAMRESTLLSSLAVSIVVRE
ALEIVFGSQMRSVPFEYLINTPVRVGPVILVTGDFIIFGVAAAMLIGLQYLLTRTRVGLA
IRAVSNNPLGAKYVGIDTDRTIITTFVVGSMMGAAAGILMGLYYGAVFPAMGFTPGIKAF
VAMVMGGLSSIPGAVICALILGISESMATTFVSSGWSDMVAYGFLILTLIFFPNGLFGAR
RERV