Protein Info for MPMX19_02660 in Azospirillum sp. SherDot2

Annotation: Inner membrane protein YbjJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 395 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 52 to 75 (24 residues), see Phobius details amino acids 86 to 102 (17 residues), see Phobius details amino acids 108 to 128 (21 residues), see Phobius details amino acids 148 to 167 (20 residues), see Phobius details amino acids 173 to 192 (20 residues), see Phobius details amino acids 213 to 235 (23 residues), see Phobius details amino acids 241 to 262 (22 residues), see Phobius details amino acids 281 to 300 (20 residues), see Phobius details amino acids 306 to 328 (23 residues), see Phobius details amino acids 340 to 362 (23 residues), see Phobius details amino acids 368 to 390 (23 residues), see Phobius details PF07690: MFS_1" amino acids 27 to 323 (297 residues), 47.3 bits, see alignment E=7.1e-17

Best Hits

KEGG orthology group: None (inferred from 93% identity to azl:AZL_001020)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (395 amino acids)

>MPMX19_02660 Inner membrane protein YbjJ (Azospirillum sp. SherDot2)
MTGAEDIRGVSGRMAEQASAARWATVAAFFLNGTVFGVWATQIPLLKNRLDLSPAVLGAA
LLCLAVGALTAMIASGPLLGRLGSAPVTRVTALLFAGLLPLPSLVPDVATLCIVLALFGA
SGGTMDVAMNAQGALVERRMGRPIMSSLHGMWSLGGLAGAGLGGLLLPLMAPAAQAALVS
AGLLALFLALQGRFLPDRNAGGGGLVLPDRKTLLLGLLAAMAFMGEGAILDWSAIHLRDD
LGAPASIAGMGFGVFCAAMAAGRFSGDRLRHRFGGATLMRAGGLLATAGLGCVLAGGIVA
GGAPVLAMVGFGLTGIGLSNIVPVLFSTAGSVDSGHPDHAVAAVSTMGYAGVLAGPPLVG
FIAEATSLATAFAMIALLALGMAAAAARAVPRRVV