Protein Info for MPMX19_02438 in Azospirillum sp. SherDot2

Annotation: DNA gyrase inhibitor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 PF00165: HTH_AraC" amino acids 42 to 82 (41 residues), 31.3 bits, see alignment 3.5e-11 amino acids 104 to 133 (30 residues), 26.7 bits, see alignment (E = 9.2e-10) PF12833: HTH_18" amino acids 55 to 134 (80 residues), 64.8 bits, see alignment E=1.4e-21 PF06445: GyrI-like" amino acids 152 to 303 (152 residues), 144 bits, see alignment E=9.5e-46 PF14526: Cass2" amino acids 159 to 302 (144 residues), 54.3 bits, see alignment E=3.7e-18

Best Hits

KEGG orthology group: K13652, AraC family transcriptional regulator (inferred from 88% identity to azl:AZL_001480)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (305 amino acids)

>MPMX19_02438 DNA gyrase inhibitor (Azospirillum sp. SherDot2)
MTNDSISADATAVWPVPCSAVAAKPGTRLDYGDRIERVVTFIAAHLDEPLDLDRLAEVAC
FSPYHFHRIYRAITGETAAETLRRLRLHRAAGDLVRDSIVMPAIARRAGYGSVEAFTRAF
GQSYGVTPAAYRKRGRLNPPVPANHQMEDSMHDVEIRDLSAHRIVGLPHTGPYMTIGTSF
DRLYTWASKQGLTGPGTRSFAIYYDDPESVRPEDLRSFAGLMLDLGVVEDGVIRVVDIPG
GRHAVVRHKGPYAELGAVYRWLYGEWLPNSGHSPGDAPCYEEYLNNPRALPPSEWLTEIC
VPLAG