Protein Info for MPMX19_02387 in Azospirillum sp. SherDot2

Annotation: Riboflavin transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 transmembrane" amino acids 23 to 44 (22 residues), see Phobius details amino acids 62 to 82 (21 residues), see Phobius details amino acids 92 to 111 (20 residues), see Phobius details amino acids 117 to 138 (22 residues), see Phobius details amino acids 146 to 163 (18 residues), see Phobius details amino acids 169 to 188 (20 residues), see Phobius details amino acids 199 to 222 (24 residues), see Phobius details amino acids 228 to 246 (19 residues), see Phobius details amino acids 258 to 276 (19 residues), see Phobius details amino acids 282 to 299 (18 residues), see Phobius details PF00892: EamA" amino acids 25 to 160 (136 residues), 62.3 bits, see alignment E=2.7e-21 amino acids 172 to 296 (125 residues), 32.8 bits, see alignment E=3.6e-12

Best Hits

KEGG orthology group: None (inferred from 80% identity to azl:AZL_001960)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (315 amino acids)

>MPMX19_02387 Riboflavin transporter (Azospirillum sp. SherDot2)
MTVTVSASSMDAGPRLRAPSNRLLLGAGFMLLSALLFGIGNTAVRWASTVMDPLEVVFFR
NLFSLLWMLPWALTAGAPACRAVLAERRLGPYVTRALTTLCAMSAWFYAISQIPLPTATA
VSFAIPLFVAAGAALLLGERVRPRRWAAVCAGLIGVIIVLRPGAAPIDLAFLALFVHCVA
AAGTVLQMRLLSRKDSSSVIVTFLGLLVTPMALVPALFVWTWPSLGTLGWLALLGGILTL
GQLAMTKALSLAESSAMMPYDYARLPFTAIVAWIVFGQTMDLWGWVGALVIAGSALYTMH
RDAADGRKMARSKPD