Protein Info for MPMX19_02219 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1015 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 355 to 378 (24 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 419 to 525 (107 residues), 43.1 bits, see alignment E=4.2e-15 PF08447: PAS_3" amino acids 448 to 525 (78 residues), 67.4 bits, see alignment 1.6e-22 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 554 to 718 (165 residues), 126.5 bits, see alignment E=8.4e-41 PF00990: GGDEF" amino acids 558 to 715 (158 residues), 141.3 bits, see alignment E=3.7e-45 PF00563: EAL" amino acids 739 to 971 (233 residues), 240.9 bits, see alignment E=2e-75

Best Hits

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1015 amino acids)

>MPMX19_02219 hypothetical protein (Azospirillum sp. SherDot2)
MTGRSVIWSSIGMRSGVLLLGLLVLATLSVPARGRATPPNRTVLVLHSYHQGYEWTDGQA
DGISAMLASAAPNALAIPYYLDWKRFPDPAGIERLRALIAYRHPKGTVDAIVSTDDAALS
FALDLRHEIYGPVPLVHGGVLPISARRLTEREANVVGIDEAKDIEGTVRMAMAANPRLQR
LFILHDDTETGLGLDAEIEALAAAGRFPAGVERQTLPALPFARLEERLAALPPDSAVLLG
TYATDPEGLVLPPEQFLELMSEKSSVPIYGLQEFLLGHGIAGGSLLSGQEHGRAVGRLAA
ALVNGASIAGLPAEQRQSVVRAADYGRIQRYGIDPARLMPLDRLVDKPFSFMETYRWLVV
TVGGVLLLLFGMVLVLSLTLRSRRKTEAALQRSNEALTESRRQLQAKVVELIASKDALRE
RGRWMRLVAEASRDIIWTWDIVNDVRVLSGRVEELLGVDAASIDSRAAWLGRIHPEDRPQ
AEEALQRHLSGELPEYRVEYRVRHRDGNYLWLYATGKILFDGDGQGGTGGRGKPVMMGGS
YTDITAQKRQQAWLDHLAHYDSLTGLPNRLTLEQHVDRLIADTKASGKAGPLALLFLDMD
NFKFINDGFGHKAGDELLMMLGLRIRKGAGDGLFIARLGGDEFVVVVQGDEAGEPAEVAQ
RLEQAFAAPFLVEGQHFFVTCSVGIARYPWDGRCFDDLLQNADTAMYRAKDSGRGRICTF
TADMNLKVVERMRLLSRARLAFDRQAFTVHYQPQVATRDGRVRGFEALVRWTDSELGPVS
PDRFIPVCEDSGLIVPLGLWVLETACVEAAGLACRGAGDVTMSVNMSAVQLAQHDFVPRV
LEILDRTGLPANRLELEITESQMIGSLDAAIGKLNALRKAGIHIALDDFGTGYSSLTYLR
TLPINTLKLDKAFIDDVHRRPDARSMVSSISRIAHDLSRSVVAEGVEEAAQWEVLSLMGC
DLIQGYFVSRPLPADRIDAFLAAWEDRRASLPVIRDDVVVGMPTPGANRPSLPIS