Protein Info for MPMX19_02065 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 30 to 52 (23 residues), see Phobius details amino acids 60 to 79 (20 residues), see Phobius details amino acids 85 to 103 (19 residues), see Phobius details amino acids 113 to 130 (18 residues), see Phobius details amino acids 159 to 179 (21 residues), see Phobius details amino acids 209 to 230 (22 residues), see Phobius details amino acids 249 to 272 (24 residues), see Phobius details amino acids 284 to 308 (25 residues), see Phobius details PF02653: BPD_transp_2" amino acids 32 to 293 (262 residues), 140.5 bits, see alignment E=3.1e-45

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 97% identity to azl:AZL_024590)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (315 amino acids)

>MPMX19_02065 hypothetical protein (Azospirillum sp. SherDot2)
MNALLHGRLTGLLALGAVIAVLPAFLPNNFYLDIAILAGFNAVVCVGLNLLIGYAGQISL
GHAGFFGIGAYASGVLVGTYGWPPIVALLAGAAFVGLLAFLVAKPILRLKGHYLAMATLG
IGIIVSIVLRTESGLTGGPDGMMVEPFRIFGVELYGEKVWYWVVGVLLVGVVWLSLNLID
SPMGRALRAVHGSEVAAEVVGVDTARFKVLVFVLSAVFASVAGSLFAHYAGLITPAKADF
FKSIELVTMVVFGGMASTFGAVVGAVVLTLLPQALTIFQDYQQIVLGGILMATMVFMPKG
LLPTLAALLPARRRA