Protein Info for MPMX19_02026 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1285 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 295 to 314 (20 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 352 to 478 (127 residues), 57 bits, see alignment E=1.1e-19 PF00989: PAS" amino acids 354 to 469 (116 residues), 56.1 bits, see alignment E=1.4e-18 PF08448: PAS_4" amino acids 359 to 474 (116 residues), 44.7 bits, see alignment E=5.7e-15 PF13426: PAS_9" amino acids 364 to 470 (107 residues), 41 bits, see alignment E=8e-14 PF00512: HisKA" amino acids 492 to 557 (66 residues), 74.2 bits, see alignment 2.7e-24 PF02518: HATPase_c" amino acids 604 to 717 (114 residues), 102.1 bits, see alignment E=9.8e-33 PF00072: Response_reg" amino acids 750 to 866 (117 residues), 76.4 bits, see alignment E=8e-25 amino acids 913 to 1025 (113 residues), 79.8 bits, see alignment E=6.7e-26 PF01627: Hpt" amino acids 1103 to 1179 (77 residues), 32.1 bits, see alignment 4.4e-11

Best Hits

KEGG orthology group: None (inferred from 80% identity to azl:AZL_024280)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1285 amino acids)

>MPMX19_02026 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MMDRHPIDAAAPTLSPTRTRLLLVAAFALIALLGAGFWGYVVWADREETLRHSREQAQST
ARLLQEHVRRTVATADLAIGRAQDLIRHYGMPGLDTNREAWITVRDMVDSLPEIAALWID
AATGDAVLTSRQYPTPRVNASDRSFFKAHLNGTDFHVGERIAGRQTGTEFFTVSRSIMLE
GRFQGVVHANVDLDYYSQLYESLDLGAGAAIAVYRTDGKPVLRFPTSEPLDGPDGNIVLR
HAADAAIETFEADGPTPGSRRILSYQRVPNLPLVAFVALSERTELAPWRERTLRGSVLVG
LAVLACAGLAYTALRSLEREVAGRRMLADTNAELDTKKSELETANEAFASANRRLNLILH
SASDSICGIDRDGTITFANPATSALTGYSNEELLGGNLHALIHSRRADGSHFPALECPVT
EVLLSGESRRGLEDTYWSKGGTPFLVEYTASPMLAEGKVEGAVVVFHEIAERKRAEAAMQ
RARLAAEAASRSKSEFLANMSHEIRTPMNAILGLIHLLQQTDLNGRQADYVQKVRVSAQS
LLGILNDILDFSKVEAGKLELERVDFRLDDLLQTLAVIVGSAAQEKDIDVLFSVAPDVPL
DLIGDPLRLQQVLINLAGNAIKFTEAGEVVVSVAVKAQGDDRAVLEFAVRDTGIGIAPEQ
RDRLFQAFSQGDSSTTRRFGGTGLGLAICARLVRLMKGAMDVESEPGKGSVFRFQAEFDR
HPGGAGRRTGGAAAGWPDSHPRPVPRDLTVLVVDDNPTAREVLGAIATGFGWTVTACCDG
RSAIAELERAAAAGHAYDMVLMDWKMPGMDGIEAARRIRADVHAGTPMIIVISGYGRERL
GARFEEAGISGFLVKPVTASTLLDAVTVAYAQAGHGAPLLPSPVPAPSGGSGLGGLSGAA
WDASRALHGRRLLLADDNDISRQVAFEILERAGASVTTASTGREALECVRAAGQPFDAVL
LDVHMPDMDGFAATAAIRALPGGQQLPIIAMTASALPEDRQRCLDNGMDAHVPKPLDLPQ
LFATLARWIGPPLVAVRPCAPCGAGPVPLHGDAMLTRAAAPPMPVGGPAGPLADLPDGLP
GIDLADALNRLGGDTDLFRRFIGQFADGYGNVAERIAAAVNGNDLATAKSIAHELKSVAG
NLGARRLSVAADALQTAAYRDDAIAAAAQVPVLRSELALVLESAQRLRAAPGGKTGPAGG
PGMPGRSAESRAQLANRLPQFATLLQESNFAAAEEFAMLAPLLTDWVEPSTMKGLSAAID
GLDFTKALGIVQRIARDLGLPLATV