Protein Info for MPMX19_01999 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 140 to 164 (25 residues), see Phobius details amino acids 174 to 194 (21 residues), see Phobius details amino acids 200 to 219 (20 residues), see Phobius details amino acids 276 to 302 (27 residues), see Phobius details amino acids 333 to 356 (24 residues), see Phobius details amino acids 366 to 394 (29 residues), see Phobius details amino acids 399 to 422 (24 residues), see Phobius details PF02653: BPD_transp_2" amino acids 140 to 419 (280 residues), 132.7 bits, see alignment E=7.3e-43

Best Hits

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (436 amino acids)

>MPMX19_01999 hypothetical protein (Azospirillum sp. SherDot2)
MLRILPLLCLVLLMLTGCGVDADQDVLCRKLIPAFEPGRVTDLSTRSYTEDKRVLRVDYR
SGSQSHWIACRFAGTSMEEGRRTLVAVATDRSGWLTDIRFAMLQQWLRIKPPRDAIGGVV
ETERPQPTRWTPLLFLAQQIINAATVACVYGLLALGYTLVYAILGQINLAMGELTMVGAM
VTAMAAAGLGMAGWATWPPALLGVLVLVIGFTAVQGWTMDRLVFRRLRGVRSHTPLIVAV
GLSIAYQEGVRLLHGARDWWPAPVLTGRYDLLSDGAFTVTALTAQLAILVLTGGLYAVLW
GIMQRTAFGRAHRACTDDIAAAELVGVDVNRTVAATFAIGGGLAAAAGAVIALYYGGVNF
FTGYLIGFKALAAAVVGGIGSVPGAMLGGALLGLVETFWSAYFALAYKDIVAFGLLTLFL
IYRPQGLLGQARGRGD