Protein Info for MPMX19_01996 in Azospirillum sp. SherDot2

Annotation: Threonylcarbamoyl-AMP synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 331 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family" amino acids 22 to 216 (195 residues), 185.9 bits, see alignment E=2.5e-59 PF01300: Sua5_yciO_yrdC" amino acids 30 to 206 (177 residues), 195.8 bits, see alignment E=4.6e-62 PF03481: Sua5_C" amino acids 213 to 328 (116 residues), 83.2 bits, see alignment E=2.6e-27

Best Hits

KEGG orthology group: K07566, putative translation factor (inferred from 91% identity to azl:AZL_023880)

Predicted SEED Role

"TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (331 amino acids)

>MPMX19_01996 Threonylcarbamoyl-AMP synthase (Azospirillum sp. SherDot2)
MTDHSAPDTGEKRPALIPATPAGIARAADLLRAGRLVAFPTETVYGLGADATDDRAVAAI
FAAKGRPQFNPLIVHVPDLVAAHSWGLFDDRAHDLATQFWPGPLTMVVPRPANSALSLLV
SAGLDSIAIRVPNHPVAQAILRAAGKPIAAPSANRSGAVSPTTPHHVLESLGDRVDAIVT
GGKCMVGLESTVIDLTGPDTVLLRPGAVLPDEMERLIGPVRLSAGDPTAPKSPGQLESHY
APNAAVRLNASSAEEGEAFLTFGPDRFVFGGTTRLNLSLEGDLNEAAANLFSHLRSLDQS
GARRIAVMPIPDVGLGQAINDRLRRAAAPRS