Protein Info for MPMX19_01937 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 481 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF22694: CtpB_N-like" amino acids 21 to 82 (62 residues), 41.1 bits, see alignment E=5e-14 TIGR00225: C-terminal processing peptidase" amino acids 48 to 365 (318 residues), 345.1 bits, see alignment E=2e-107 PF00595: PDZ" amino acids 92 to 163 (72 residues), 35.6 bits, see alignment E=2.4e-12 PF13180: PDZ_2" amino acids 96 to 176 (81 residues), 46 bits, see alignment E=1.4e-15 PF17820: PDZ_6" amino acids 111 to 165 (55 residues), 45.6 bits, see alignment 1.2e-15 PF03572: Peptidase_S41" amino acids 193 to 359 (167 residues), 200.5 bits, see alignment E=3.5e-63

Best Hits

KEGG orthology group: K03797, carboxyl-terminal processing protease [EC: 3.4.21.102] (inferred from 92% identity to azl:AZL_023320)

Predicted SEED Role

"Carboxyl-terminal protease (EC 3.4.21.102)" (EC 3.4.21.102)

Isozymes

Compare fitness of predicted isozymes for: 3.4.21.102

Use Curated BLAST to search for 3.4.21.102

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (481 amino acids)

>MPMX19_01937 hypothetical protein (Azospirillum sp. SherDot2)
MRMFKRAATAAALVFLGAGVATVTAQSSNSSDTYRQLNLFGDVFERVRAEYVEPVTDEQL
IESAINGMLTSLDPHSSYLNKKSFQDMQVQTRGEFGGLGIEVTMENGLVKVVSPIDDTPA
FRAGLQPGDLIVQLNGEAVMGLSLNEAVEKMRGPVGSELKVTVRRGEAGEPFTVSLTRAV
IKVQSVRFRTEGDIGYVRITSFNEQTQSGLEKAISSIQQQLGDKLKGFVLDLRNNPGGLL
DQAVSVSDTFLEKGEIVSTRGRRAEEGTRFNAKPGDLIKGMPLVVLINGGSASASEIVAG
ALQDHKRAIIMGTQSFGKGSVQTIIPLPGHGAMRLTTARYYTPSGRSIQQLGITPDIEVH
VAKVEDLDRNVIRRREADLKGALVNPDAASKAPRPATTNPAAPGTPAAPNPAAPAPGPGA
GAAPAAPGAAAPGAAPAPGAAPAPAEGAAAEGAEPPFDFQLARALDLLRGVALFQQRSAA
R