Protein Info for MPMX19_01923 in Azospirillum sp. SherDot2

Annotation: Putative multidrug export ATP-binding/permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 605 transmembrane" amino acids 40 to 62 (23 residues), see Phobius details amino acids 83 to 103 (21 residues), see Phobius details amino acids 149 to 176 (28 residues), see Phobius details amino acids 182 to 201 (20 residues), see Phobius details amino acids 264 to 285 (22 residues), see Phobius details amino acids 298 to 317 (20 residues), see Phobius details TIGR02204: ABC transporter, permease/ATP-binding protein" amino acids 24 to 598 (575 residues), 898.4 bits, see alignment E=1.1e-274 PF00664: ABC_membrane" amino acids 47 to 312 (266 residues), 179.5 bits, see alignment E=1.2e-56 PF00005: ABC_tran" amino acids 378 to 527 (150 residues), 112.9 bits, see alignment E=2e-36

Best Hits

KEGG orthology group: K06147, ATP-binding cassette, subfamily B, bacterial (inferred from 95% identity to azl:AZL_023220)

Predicted SEED Role

"Lipid A export ATP-binding/permease protein MsbA" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (605 amino acids)

>MPMX19_01923 Putative multidrug export ATP-binding/permease protein (Azospirillum sp. SherDot2)
MARQPSPDMIAASARGEADARRRDLGPLRRLVPFLLPYKWRILGAMVALTVAAGTVLGLG
QGMRVLIDQGFAGGDTSLLDRSLLVLLAVIALMAASTYGRFYLVSWIGERVVADIRRAVY
DHVLTLSPGFFETTKTGEILSRLTTDTTLLQVVVGSSASIALRNALLFLGGTGMLLITSP
KLTGLVALVVPLVVAPIIFFGRRVRKLSRDSQDRIADIGSFVEETLAAIRTVQAFTHEAI
DRTLFGKRVEEAFDVAIRRVRVRAVMTVIVIVLVFGAVGIILWIGGHDVVAGRITPGQLS
AFVIYSVVVAGSVGAISEVIGDLQRAAGATERLFGLLAIESDIRAPAAPKPLPSPAAGAL
SFDAVRFHYPSRPDWAALEGFSLDVKPGERVALVGPSGAGKSTVFQLLLRYYDPQAGSVR
LDGVDVRDADPVDVRRRLGLVAQDPVVFSANAWENIRYGRPDASDAEVRAAAEAAHALDF
LDALPEGFGTFLGEKGVRLSGGQRQRLAIARAILRDPPVLLLDEATSALDAESERMVQDA
LDRLMHGRTTLIVAHRLATVLNADRIVVMDKGRVVETGTHGELVAQGGLYARLAALQFDR
ADGVA