Protein Info for MPMX19_01833 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 725 transmembrane" amino acids 18 to 39 (22 residues), see Phobius details amino acids 303 to 324 (22 residues), see Phobius details PF00512: HisKA" amino acids 360 to 422 (63 residues), 36.6 bits, see alignment E=5.9e-13 PF02518: HATPase_c" amino acids 465 to 573 (109 residues), 81.7 bits, see alignment E=8.3e-27 PF00072: Response_reg" amino acids 596 to 705 (110 residues), 75.1 bits, see alignment E=7.3e-25

Best Hits

KEGG orthology group: None (inferred from 86% identity to azl:AZL_022400)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (725 amino acids)

>MPMX19_01833 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MPVRNLDSRTDRRGALRLLRLLLAVSVALPLVLFAGIGWRERWEAQDEAERNSSKNALIL
HEHVLKVFDTMSQVLDRVDERIHGRSWREIAESEPLHRYLKTLEGELEQIGAIGLTDPDG
FVRNSSLVFPARNSYIGDRADFREQREQDSGLLIAGPVVDPTSGKPSFGISRRRSGPGGP
DGSFDGMIAAIVDPDYFASFYRRIIGTEGESIALIRDDGAMLMRFPTLDPTRPNATLPTL
PADRGLRAEIRRQPDEGVFRTGNSIVQGLERVFAYKRVGAFPIYVVYGLDGTQVTRSWWR
NMALDAAFVAPATLALALIAWLAYSRAASESAAVRRWAEEVRNRERLEEALRQSQKMEAL
GQLTGGVAHDFNNLLTAALANLHLLSRHLPADGQRFLGGARTALERAEKLTRQLLSFSRQ
DAVNPTVVDLGDSLRRMADLLERSIRADVVLEWDIAPVPMAVAVDQVQLEMAVLNLVLNA
RDAMPGGGRIRIAAAPGPEPRTARIEVSDSGAGMPPDVMARAFDPFFTTKGVGKGTGLGL
SMVYGFARQSGGSATIDSRPGEGTHVCIDLPLTDARPEEPAPVPAAPVADIRPLRILVVE
DNPLVLMATVEGLTQEGFSVETAEDGVTALALLETDRNFDLVVSDVVMPGGVSGIDLARH
IREHWPQLRVLLASGYSPESLATMGADTASVLAKPFTPDQLAVRIRSLTRTGPGGGAADG
IRSAR