Protein Info for MPMX19_01759 in Azospirillum sp. SherDot2

Annotation: putative HTH-type transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 307 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details TIGR03298: transcriptional regulator, ArgP family" amino acids 2 to 293 (292 residues), 386.1 bits, see alignment E=4.6e-120 PF00126: HTH_1" amino acids 7 to 62 (56 residues), 62.3 bits, see alignment E=3.4e-21 PF03466: LysR_substrate" amino acids 93 to 273 (181 residues), 61.8 bits, see alignment E=6e-21

Best Hits

KEGG orthology group: K05596, LysR family transcriptional regulator, chromosome initiation inhibitor (inferred from 86% identity to azl:AZL_021570)

Predicted SEED Role

"Chromosome initiation inhibitor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (307 amino acids)

>MPMX19_01759 putative HTH-type transcriptional regulator (Azospirillum sp. SherDot2)
MLDYPLMAALAAVIRTGSFERAARQLHVTPSAVSQRVKLLEERLGTVLVVRGQPCTGTAA
GQRLCQHVEQVSLLESELRGALPGLSPADGPITLRIAVNADSLATWFVAAMAELPGCLFD
LVLDDQDHSAEWLRKGEVLAAVTASAAPVPGCNSHPLGALRYRATASPDYLHRHFPDGVM
AKSLATAPCLTFNRKDRLQAQWLRLVLGDHEPVPTPPTHWLPSTHAFVDGALAGLGWGMN
PDPLVADHLAAGRLVELVPGRPLDVPLHWQQSRIAGTALDELSRAVLRAGRQALHPIVES
MGSPPAA