Protein Info for MPMX19_01730 in Azospirillum sp. SherDot2

Annotation: Ribonuclease J1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 571 PF00753: Lactamase_B" amino acids 43 to 181 (139 residues), 46.2 bits, see alignment E=1.3e-15 PF12706: Lactamase_B_2" amino acids 65 to 187 (123 residues), 40.9 bits, see alignment E=4.4e-14 PF22505: RNase_J_b_CASP" amino acids 243 to 366 (124 residues), 130.7 bits, see alignment E=6.8e-42 PF07521: RMMBL" amino acids 381 to 423 (43 residues), 39.7 bits, see alignment 9.5e-14 PF17770: RNase_J_C" amino acids 472 to 570 (99 residues), 42 bits, see alignment E=4e-14

Best Hits

KEGG orthology group: K07021, (no description) (inferred from 95% identity to azl:AZL_021320)

Predicted SEED Role

"Metallo-beta-lactamase family protein, RNA-specific" in subsystem Bacterial RNA-metabolizing Zn-dependent hydrolases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (571 amino acids)

>MPMX19_01730 Ribonuclease J1 (Azospirillum sp. SherDot2)
MTQSSKTAAGLSEAPADTFVPEDGALYFLPLGGSGEIGMNLNLYCHQGKWLMVDLGISFA
DDTMPGLDVIMPDPAFIAARRNDLVGLVLTHAHEDHLGAVQYLWPELRCPVYCTPFTAAF
LRAKLHEKGLSSTVPIHEIPLGGTVEVGPFSVEYVTMTHSIPEPNALAIRTSAGTILHTG
DWKLDPDPLVGETADEERLRAIGDEGVLALVGDSTNALVPGASGSEATVRDALMELFGRY
RDRRIAVSCFATNVARLESIAAAAAAHDRHVALVGRSLWRINEAARTTGYLADVPKFLSE
HDASYLPREKLVLICTGSQGEPRSALARIAANDHPQVTLSRGDVVIFSSREIPGNERAIG
RMQNQLVTQGVELVTADEASVHVSGHPARDELVRMYQWVRPHIAVPVHGEQRHQQAHAAL
AEDCQIPHSIVPANGEILRLDGAEGARVVAHVRAGRMAVDGKRLVPLDTGMMRARNRMVN
NGAAVVTLVMSATGELMTAPQVAVMGLIDEATDRDLLLDVVDAVRESVAMLPKSARADDA
QVKEAARIAVRRCFNASHGKKPVTEVHLVRV