Protein Info for MPMX19_01711 in Azospirillum sp. SherDot2

Annotation: putative riboflavin import permease protein RfuD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 36 to 57 (22 residues), see Phobius details amino acids 65 to 88 (24 residues), see Phobius details amino acids 96 to 117 (22 residues), see Phobius details amino acids 139 to 161 (23 residues), see Phobius details amino acids 190 to 209 (20 residues), see Phobius details amino acids 220 to 237 (18 residues), see Phobius details amino acids 244 to 263 (20 residues), see Phobius details amino acids 270 to 286 (17 residues), see Phobius details PF02653: BPD_transp_2" amino acids 12 to 282 (271 residues), 124.4 bits, see alignment E=2.4e-40

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 98% identity to azl:AZL_021100)

Predicted SEED Role

"Putative deoxyribose-specific ABC transporter, permease protein" in subsystem Deoxyribose and Deoxynucleoside Catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (309 amino acids)

>MPMX19_01711 putative riboflavin import permease protein RfuD (Azospirillum sp. SherDot2)
MNDLALIGPILAAMFAAATPLLLAALGELVVEKSGVLNLGVEGMMLVGAVCGFAVTVQTG
SPVTGFLVAAFAGAATASLFAVLTLFLLANQVATGLALTLFGVGLSALIGQGFVGIPLEG
LPKLHIPGLTDLPVVGQALFGQDIMVYLAVAAVPLVHLFLYRSRAGLVLRAVGENHTAAH
ALGYKVLRIRFFAVLFGGAMAGLGGAFLSMDYTPMWAENMTSGRGWIALALVVFATWKPV
RAMLGAWLFGGVTILQLHVQGLGIDVPSQLLSMLPYLATVLVLVLISRDVARIRLNAPAC
LGKLFHPDA