Protein Info for MPMX19_01611 in Azospirillum sp. SherDot2

Annotation: Transcriptional regulatory protein DegU

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 226 PF00072: Response_reg" amino acids 6 to 117 (112 residues), 52.8 bits, see alignment E=4.1e-18 PF00196: GerE" amino acids 154 to 208 (55 residues), 72.3 bits, see alignment E=1.9e-24

Best Hits

Swiss-Prot: 35% identical to NARP_HAEIN: Nitrate/nitrite response regulator protein homolog (narP) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: None (inferred from 94% identity to azl:AZL_019680)

Predicted SEED Role

"Nitrate/nitrite response regulator protein" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (226 amino acids)

>MPMX19_01611 Transcriptional regulatory protein DegU (Azospirillum sp. SherDot2)
MDAINVFLIDANKLFREGMKRLFEGTPFNVVGEAGSLREGLSTLGTGQNPDLILIDLPSG
ADEEVEAMRSLREAHPSIRIVILTNDLETRRLSAALGAGAGGYLLKDIACEALMQSLKLV
MMGEKVFPTHLAELLVSGRTEDMGAELPTRRKGLSQREVQILRCLLNGNSNKMIANHLSI
TEATVKVHLKSLLRKINASNRTQAAIWALNNGIGDQAAETGVAATV