Protein Info for MPMX19_01528 in Azospirillum sp. SherDot2

Annotation: Replication-associated recombination protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 PF05496: RuvB_N" amino acids 26 to 144 (119 residues), 46.2 bits, see alignment E=1.5e-15 PF00004: AAA" amino acids 59 to 167 (109 residues), 58.9 bits, see alignment E=2.6e-19 PF07728: AAA_5" amino acids 59 to 161 (103 residues), 27.4 bits, see alignment E=1.1e-09 PF16193: AAA_assoc_2" amino acids 189 to 263 (75 residues), 66.2 bits, see alignment E=9.1e-22 PF12002: MgsA_C" amino acids 264 to 429 (166 residues), 226.3 bits, see alignment E=7.5e-71

Best Hits

KEGG orthology group: K07478, putative ATPase (inferred from 97% identity to azl:AZL_018730)

Predicted SEED Role

"FIG065221: Holliday junction DNA helicase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (439 amino acids)

>MPMX19_01528 Replication-associated recombination protein A (Azospirillum sp. SherDot2)
MAKRGESGGDAGLFSAAAPRPLADRLRPRTLDEVVGQDHLLKPDGPLGRMVAARRLASMI
LWGPPGCGKTTIARLLAHSTDLHFEPLSAVFSGVADLRKVFDAARARRVAGQGTLLFIDE
IHRFNRSQQDGFLPFVEDGTVTLVGATTENPSFELNAALLSRAQVFVLNRLDDTALEKLL
SRAEAEMGRPLPLDADARAAVKAMADGDGRFCLNLCEELFALPGETILDTNALAATIQRR
APLYDKSQEGHYNLISALHKSLRGSDTDAALYWYSRMLDGGEDPRYIARRLTRFAVEDIG
LADPNALTQAVAAWEAYERLGSPEGELALAQLVIYLGTAPKSNAGYTAYKASVRAAKETG
SLMPPKHILNAPTKLMKTIGYGKGYEYDHDTAEGFSGQNYFPDGMARREFYQPVERGFER
DLRKRLDYWAKLRERRGEE