Protein Info for MPMX19_01512 in Azospirillum sp. SherDot2

Annotation: Inner membrane protein YgaZ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 49 to 68 (20 residues), see Phobius details amino acids 75 to 94 (20 residues), see Phobius details amino acids 135 to 160 (26 residues), see Phobius details amino acids 166 to 186 (21 residues), see Phobius details amino acids 195 to 208 (14 residues), see Phobius details amino acids 213 to 231 (19 residues), see Phobius details PF03591: AzlC" amino acids 25 to 162 (138 residues), 133.7 bits, see alignment E=3.1e-43

Best Hits

KEGG orthology group: None (inferred from 87% identity to azl:AZL_018620)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (240 amino acids)

>MPMX19_01512 Inner membrane protein YgaZ (Azospirillum sp. SherDot2)
MSTGSFAVPASPRQDFASGVVHSLPIVAGAIPFGFLLGSLAAKAGLSALDMGLMSALVFA
GSSQFVAVELLDKGSAGLAVVGAILLVNLRHLLMGATLEPRFRGVSRARAGLALFFMTDE
QWALALRRGPELSLAYWYGVAATLYLAWLSSTVAGTLAGTLIADPAAWGLDFTFIAVFLC
LLAGLWRGVGSLPPWLASAAAALAVHALSSGGTWHILAGAVAGGAVAALQAKGQGRIRNA