Protein Info for MPMX19_01507 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 492 TIGR00229: PAS domain S-box protein" amino acids 140 to 249 (110 residues), 52.2 bits, see alignment E=3.4e-18 PF08448: PAS_4" amino acids 143 to 248 (106 residues), 39.3 bits, see alignment E=2.1e-13 PF00989: PAS" amino acids 146 to 239 (94 residues), 38.1 bits, see alignment E=4e-13 PF13426: PAS_9" amino acids 150 to 247 (98 residues), 51.1 bits, see alignment E=4.2e-17 PF08447: PAS_3" amino acids 156 to 241 (86 residues), 46 bits, see alignment E=1.6e-15 PF00015: MCPsignal" amino acids 329 to 477 (149 residues), 94.2 bits, see alignment E=2.5e-30

Best Hits

KEGG orthology group: None (inferred from 87% identity to azl:AZL_018510)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (492 amino acids)

>MPMX19_01507 hypothetical protein (Azospirillum sp. SherDot2)
MFGRGKHTLALKRKMAALDALRAKVMVADADLTIVHVNPAVVELLREAEGDLRKELPRLD
VSRLVGSNIDVFHKNPSHQRTMLASLTKPHSATIKVGGHQFDLLVTPLTEDGQRIGFVVE
WADAKDRLQNLDYAAQMTAINRSQAVIEFTTEGIITRANDNFLKVMGYRLDEVVGKNHSM
FVETAYRDSADYARFWETLRRGEFQAAQYKRIAKSGKPVWIEGAYNPILDETGRIVKVVK
FAVDVTAQVSLLNNLKIMIDKNFGEVDRALRLSMGEAESANHAAGSTSASVQAVAASAEE
LVASIGEISQSMTRARAATDGAFDRTVTVAESTDRLAAAAQAMNGIVGMINSIAGQINLL
ALNATIEAARAGEAGKGFAVVASEVKNLANQAGKATEQISAEIEGIQSTSTEVATALSAI
REAVAAVREHVTGTASAVEEQSAVTQNMSSNMQSASAAVATVTSNVAAISSAVSQVSGAV
ERTKEAAHVLVR