Protein Info for MPMX19_01459 in Azospirillum sp. SherDot2

Annotation: putative ABC transporter ATP-binding protein YheS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 631 PF00005: ABC_tran" amino acids 21 to 175 (155 residues), 84.5 bits, see alignment E=4.7e-27 amino acids 325 to 456 (132 residues), 70.2 bits, see alignment E=1.2e-22 PF12848: ABC_tran_Xtn" amino acids 214 to 295 (82 residues), 93.7 bits, see alignment E=2.4e-30 PF13304: AAA_21" amino acids 422 to 488 (67 residues), 28.5 bits, see alignment E=5.9e-10 PF16326: ABC_tran_CTD" amino acids 557 to 617 (61 residues), 41.2 bits, see alignment 6.5e-14

Best Hits

Swiss-Prot: 48% identical to YHES_ECOLI: Uncharacterized ABC transporter ATP-binding protein YheS (yheS) from Escherichia coli (strain K12)

KEGG orthology group: K06158, ATP-binding cassette, sub-family F, member 3 (inferred from 97% identity to azl:AZL_018090)

Predicted SEED Role

"ABC transporter ATP-binding protein uup"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (631 amino acids)

>MPMX19_01459 putative ABC transporter ATP-binding protein YheS (Azospirillum sp. SherDot2)
MLHINDLTFRFGGRVLFDHATAVVPKGHRVALVGRNGTGKSTLLKLISGQLQTDAGAITL
PAGMRMGMVAQEAPSGPTTLIDAVLAADTERTALLAEAETVTDPMRIGEVHARLADIEAH
SAPSRAAQVLSGLGFDAEAQQRPCSDFSGGWRMRVALAGVLFSRPDLLLLDEPTNHLDLE
ATIWLEGYLKNYPHTILLVSHDRELLNAVPTTTIHIDQGKLVTYSGNYDQFLAQRRANQE
RLASMAAKQDARRKHMMAYVDRFRFKASKARQAQSRLKLLEKMESITLMEDDPEVVFNFP
APDELAPPLIALEGVSIGYGDKVILRRVNLRIDMEDRIGLLGANGNGKSTLVKLLANRLQ
PMAGEMRRPSKLRIGYFAQHQAEELDLSLTPIQQTQRIMPLALEEKVRAHLGRFGFPQVK
AETKISSLSGGEKARLLLALMSREVPHILMLDEPTNHLDIDSREALIEAINDFPGAVIII
SHDPHLIEMTVDRLLLVADGTVQAYDGDLDDYRRYLLDRAKAERAVAKGGADRDAGPNKK
DQRRAAAEARTALAPLKRKATDAEALVTKLSEEKRKIEAKMSDPSLYTGPSDKLTKLQIE
LGTVEKKLATAEETWLEALELYESAAAEAGV