Protein Info for MPMX19_01457 in Azospirillum sp. SherDot2

Annotation: Oxygen-dependent choline dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 591 PF00732: GMC_oxred_N" amino acids 32 to 327 (296 residues), 179.5 bits, see alignment E=1.3e-56 TIGR01810: choline dehydrogenase" amino acids 33 to 564 (532 residues), 885.4 bits, see alignment E=7.1e-271 PF05199: GMC_oxred_C" amino acids 420 to 554 (135 residues), 138 bits, see alignment E=5.2e-44

Best Hits

Swiss-Prot: 77% identical to BETA_PARPJ: Oxygen-dependent choline dehydrogenase (betA) from Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN)

KEGG orthology group: K00108, choline dehydrogenase [EC: 1.1.99.1] (inferred from 95% identity to azl:AZL_018070)

MetaCyc: 76% identical to choline dehydrogenase (Pseudomonas aeruginosa)
Choline dehydrogenase. [EC: 1.1.99.1]

Predicted SEED Role

"Choline dehydrogenase (EC 1.1.99.1)" in subsystem Choline and Betaine Uptake and Betaine Biosynthesis (EC 1.1.99.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.1.99.1

Use Curated BLAST to search for 1.1.99.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (591 amino acids)

>MPMX19_01457 Oxygen-dependent choline dehydrogenase (Azospirillum sp. SherDot2)
MSNQPTSGAAAPENGAAMPAATSSFAAAVREYDYIIVGAGSAGNVLACRLTEDAGVSVLL
LEAGGPDHRLDYRTQMPAALAFPLQGRRYNWAYETEPEPHMDNRRMECGRGKGLGGSSLI
NGMCYIRGNALDYDGWAGLPGLEDWSYLDCLPYFRKAETRDIGPDAYHGGDGPLFVTTAK
PGVNPLYEAMVEAGAQAGYGRTADLNGYRQEGFGPMDRTVTAQGRRCSTARGYLDRARER
PGLTIVTHALTDRILFDGQRAVGVAYLRNGTPVTARARREVLLCAGAIASPAILQRSGVG
PSPLLRELGVETVIDLPGVGGDLQDHLEMYIQYHCRQPVSLYPALKWWNQPAIGAEWLFL
GTGIGASNQFEAGGFIRTGDDVPWPNIQYHFLPVAISYNGTNAVEAHGFQAHVGSMRSPS
KGRVHARSRDPGQAPSILFNYMADPQDWREFRAGIRITRDIMRQRALAPYRGEEISPGAD
CVTDADLDAFVRHHAETAYHPCGTCRMGTDDGAVVDGQGRVHGLEGLRVIDASIMPRIIT
GNLNAPTIMMAEKLADAVRGRPPLPRADVPYYVAEAAMTQKEIQKAQRLRA