Protein Info for MPMX19_01452 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 859 transmembrane" amino acids 26 to 45 (20 residues), see Phobius details amino acids 51 to 70 (20 residues), see Phobius details PF12860: PAS_7" amino acids 232 to 345 (114 residues), 73 bits, see alignment E=9.2e-24 TIGR00229: PAS domain S-box protein" amino acids 363 to 482 (120 residues), 43.8 bits, see alignment E=1.3e-15 PF13188: PAS_8" amino acids 368 to 418 (51 residues), 31.3 bits, see alignment 5.8e-11 PF00989: PAS" amino acids 368 to 472 (105 residues), 34.8 bits, see alignment E=5.7e-12 PF08448: PAS_4" amino acids 380 to 477 (98 residues), 26 bits, see alignment E=3.6e-09 PF13426: PAS_9" amino acids 388 to 474 (87 residues), 25.1 bits, see alignment E=7.3e-09 PF00512: HisKA" amino acids 492 to 552 (61 residues), 32.1 bits, see alignment 3.9e-11 PF02518: HATPase_c" amino acids 600 to 719 (120 residues), 63.7 bits, see alignment E=8.5e-21 PF00072: Response_reg" amino acids 742 to 853 (112 residues), 84.3 bits, see alignment E=2.7e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (859 amino acids)

>MPMX19_01452 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MDVAGTDRPHPTGDAARPVSGPSGLSASFPGLLAGLTGIGTLAALSASGHVGWPVAGALV
AAGGLALWSARRAGAAATALARSDAALRRATDELEGLRDRSRDFAAVTPGWFWETGSDHR
YLSLSGGLTALLGCDPRTVFGDSLLDLGVLVADEATWAEYRADIEAGRAFRDLELSFEGV
DGRDLVLRLSAVPVRGADGRFRGYRGCGVDATAETLALVEARFMQAVVHDAIDSVSEGFV
LFSADGRLLICNEQYRRAYPTIADMLTPGRSFAEILRAAAERGGYEGEGDIGAWVEQRLT
RHLQHSTPVDGRLSDGRWYRISEHATGTGGVVKILMDITELKTREEQLAGQTARLEQTVG
ALRESELRYRQLVELAPYGIVIWDRAAIRFANGTAATILGVAADALEGQLLAGFLAEGEA
LAAMLAAAAEGEERRLECDALRPTGERRRLEVAASQAVYGGGPAVLLVLNDITDRRRVEG
ELQRAQKMEAVGRMAGGIAHEFNNMLTAIGGFARLAERNPADPDRVLTCVQEIAKASERA
AALTAQLLDFSHRRVTDEREVVAVAPLVRDLRVFLKPLLSAGIDVAILADDESAHALVNP
VTLNQALLNLALNGRDAMPHGGTLTIALAVETPDDAFFARHRGLKPGRYVAIRVSDQGPG
VPAEIRDRVWEPFFTTKEPGKGTGLGLWMVYGTAQQSGGAVELEGEEGQGATFALYLPAV
EPPASPVGLDPLQVAEGEGAVILLVDDEDSVRRYLRLVLEEAGCTVVEASDGQEALTRYD
EAGGLFDAVVSDVSMPKMNGLELARALETRNQLLPILFLTGYASRETAAGLTAQEGRQIV
MKPVAPERLLSALRDLLAL