Protein Info for MPMX19_01433 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 563 transmembrane" amino acids 14 to 38 (25 residues), see Phobius details amino acids 189 to 211 (23 residues), see Phobius details PF12729: 4HB_MCP_1" amino acids 8 to 181 (174 residues), 31.6 bits, see alignment E=1.7e-11 PF00672: HAMP" amino acids 216 to 261 (46 residues), 37.4 bits, see alignment 3.9e-13 PF00015: MCPsignal" amino acids 368 to 528 (161 residues), 105.1 bits, see alignment E=5.8e-34

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 46% identity to rce:RC1_0383)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (563 amino acids)

>MPMX19_01433 hypothetical protein (Azospirillum sp. SherDot2)
MGTLLTRISISSKISAIVILMALIASVIGIIGFAAIQTFGGRVDDIQVRSQRALLAEQVS
SLIYKTVMDSRGLYAAKSKDDAQLFSKGIRESTAAIGKRMAEWERLLTPDRKADFQKMIA
TANEFIVIRNEVARLGVEASPEAAQKHGDTPESRTSRTALGKSLEAAAQRNMDSIQQAND
ELDAFSTHMITLMLVVGIGGIGMAVVISVAVSRSGIVKPITGITGTMSRLADGDLSVEVA
GKDRGDEIGGMARAVEVFRQNALDRARMAAAEEAERLDKERRTAAVERLVAGFDSSMSGI
LRTVSAAATELDATAQSMSHTAEQTNSQAASTAAAAEQASVNVQTVASATDELTASISEI
SAQVSRSTTIAAQAVGEAQATNRQVQGLVEAAQRIGDVVKLITDIASQTNLLALNATIEA
ARAGEAGKGFAVVASEVKNLATQTAKATEEIAGQIQAMQQATGEAANAITGIGGTITAIN
EIATSIASAIEEQGAATGEIARNVQEAARGTEVVTANIAEVSQGATQTGSAATQVLGAAG
ELSRQSEQMKIEVERFLAGIRAA