Protein Info for MPMX19_01217 in Azospirillum sp. SherDot2

Annotation: Ribosomal RNA small subunit methyltransferase C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 340 PF08468: MTS_N" amino acids 67 to 160 (94 residues), 37.1 bits, see alignment E=8.4e-13 PF05175: MTS" amino acids 171 to 335 (165 residues), 125.1 bits, see alignment E=6e-40 PF06325: PrmA" amino acids 187 to 245 (59 residues), 23.4 bits, see alignment E=9.6e-09 PF13847: Methyltransf_31" amino acids 202 to 275 (74 residues), 29.1 bits, see alignment E=1.9e-10 PF13649: Methyltransf_25" amino acids 205 to 281 (77 residues), 31.8 bits, see alignment E=4.7e-11

Best Hits

KEGG orthology group: K00564, ribosomal RNA small subunit methyltransferase C [EC: 2.1.1.172] (inferred from 95% identity to azl:AZL_013970)

Predicted SEED Role

No annotation

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.1.1.172

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (340 amino acids)

>MPMX19_01217 Ribosomal RNA small subunit methyltransferase C (Azospirillum sp. SherDot2)
MARLDNRATDRDSTVAAVAAEALSEIRPQGRILVAFDSDGAIADALRDGGADVVVWNRLA
TGGQAATPWPAEGPFDGAVLRLPRGWAGFEMALHALASRLAPGAPLWIAGGNDEGVTSAA
KHLDGLTEEPETLIIKRRARLLLTQRTDAPAKGALEDWRQTVTLTLPDRTLELVSYPGLF
AHGHLDAGTECLLKVLPEVAAGTRVLDFGCGAGVIARAVRERQPDAPLTLLDIDAVALHA
ARQNVPDAELVLSDGLAGLGTRERFGLILSNPPLHRGKDEDFGMLDALVAGTKQYLKLRG
TLVAVTQRTAGVGKLFKAAFGHSDMLMETTQFQVWSGTPK