Protein Info for MPMX19_01178 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 683 PF13424: TPR_12" amino acids 51 to 115 (65 residues), 31.4 bits, see alignment E=7.8e-11 PF13374: TPR_10" amino acids 52 to 80 (29 residues), 24.9 bits, see alignment (E = 7.2e-09) PF13176: TPR_7" amino acids 56 to 81 (26 residues), 14.8 bits, see alignment (E = 1.2e-05) PF13181: TPR_8" amino acids 124 to 150 (27 residues), 19.5 bits, see alignment (E = 3.6e-07) PF13844: Glyco_transf_41" amino acids 304 to 463 (160 residues), 136.7 bits, see alignment E=3.7e-43 amino acids 472 to 656 (185 residues), 149.3 bits, see alignment E=5.6e-47

Best Hits

KEGG orthology group: None (inferred from 84% identity to azl:AZL_014390)

Predicted SEED Role

"TPR domain protein, putative component of TonB system" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (683 amino acids)

>MPMX19_01178 hypothetical protein (Azospirillum sp. SherDot2)
MTSPPPTLKESDKGAIADLRRRLAGKAGDAALLSALFAALDTLGQAGTPEEAVARSNLGE
TLRRQGRLAEAEAHHRKALDWLPDFGGNHYNWGVTLQALGRPAEAAAAYGEAARLMPGFA
PAPCNQGVLLRELGRLDEAEAALRRALELDHALVPARLALAALHRDRGDLDRAAAGFRAC
LSLMPDLAEGQANLALALKERGQRGGPAEDAAASIVGFDRALRIGLPDAGGVLAQLVQQR
RHLCRWAGLGALSARLVDLVREGRTQQAYPWIVLGEGAGPALERACAERYSGWKTRGIRP
GFPKRTDRGAKLRIGYLSTDFHEHATAVLIAELIERHDRDRFEIIGCSYGPDDGGPLRKR
LVAGFDRLLDLSALTDEAAARLIHEAGVDILVDLKGHTQNARPGIAAYRPAPVQAQWLGY
PGTLGSTAIDYVIADAVVAPADHQRFYCERIVHLPDSYQPNDRQRSIGPTPGRADCGLPA
EGFVFCAFNAPYKIGPDLFGRWCRILQRVPGSVLWLLDGPAEVAANLRGAAAERGVAPER
LIFAPRLPGPAHLARHRLADLFLDSAPVGAHTTASDALWAGLPVLSVPGRSFAGRVAASL
LRAVGLPKLAVADWDAYEATAQRLAEQPAELAALKLRLEQACATAPLFDTDRFARSIESA
FATMWDIHAAGEPPRGFAVPPQG