Protein Info for MPMX19_01124 in Azospirillum sp. SherDot2

Annotation: Aliphatic sulfonates import ATP-binding protein SsuB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 243 PF00005: ABC_tran" amino acids 22 to 160 (139 residues), 96.4 bits, see alignment E=2.5e-31

Best Hits

KEGG orthology group: K02049, sulfonate/nitrate/taurine transport system ATP-binding protein (inferred from 96% identity to azl:AZL_014930)

Predicted SEED Role

"Hydroxymethylpyrimidine ABC transporter, ATPase component" in subsystem Thiamin biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (243 amino acids)

>MPMX19_01124 Aliphatic sulfonates import ATP-binding protein SsuB (Azospirillum sp. SherDot2)
MTPLSVTIARARLTYGGTLLFSDLTLELPAGRTTCLLGPSGVGKTTLLRILAGLAEPEPP
TEVVTGDRRPLAGRIAYMAQQDLLLPWLTVLDNVLLGDRLRHRRPDPARVEQARALLDRV
GLAGRERDRPAALSGGQKQRVALARTLMEDKPLVLMDEPFSALDAITRLRLQETAAETLA
GRTVLMVTHDPLEALRIGDRLHVMTGRPAIMGPALEPSGPVPRRVDDPDLLAHQAELLRR
LAE