Protein Info for MPMX19_00997 in Azospirillum sp. SherDot2

Annotation: Outer membrane protein assembly factor BamA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 779 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details TIGR03303: outer membrane protein assembly complex, YaeT protein" amino acids 51 to 779 (729 residues), 823 bits, see alignment E=1.3e-251 PF07244: POTRA" amino acids 51 to 116 (66 residues), 37.3 bits, see alignment E=5.6e-13 amino acids 118 to 195 (78 residues), 66.5 bits, see alignment E=4.3e-22 amino acids 200 to 286 (87 residues), 52.9 bits, see alignment E=7.8e-18 amino acids 289 to 368 (80 residues), 54.2 bits, see alignment E=2.9e-18 amino acids 373 to 443 (71 residues), 51.1 bits, see alignment E=2.7e-17 PF01103: Omp85" amino acids 471 to 779 (309 residues), 263 bits, see alignment E=7.7e-82

Best Hits

KEGG orthology group: K07277, outer membrane protein (inferred from 94% identity to azl:AZL_016180)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (779 amino acids)

>MPMX19_00997 Outer membrane protein assembly factor BamA (Azospirillum sp. SherDot2)
MPVSSKVLVAGLLASCAMTTVSVAHAQTASSPGRATGATGSMVAQVFSGGTVRDIRVEGT
QRIEPSTVRSYLTIQPGDPFDPDRIDQSLKSLFNTGLFADVVLKREGDALVVTVAENPII
NRIAFEGNRRIDKETLDKEIQLRPRVVYTRTRVQSDVQRIQDIYRRQGRFGATVEPKIIQ
LDQNRVDLVFEINEGVRTGVRGITFIGNEHFSDGTLRENVQTKESAWWRFLTSDDNYDPD
RLSYDRDLLRRFYLKEGYADFRVVSAVAELTPDKSDFFITFTIEEGERYKFGKVDINTSL
KQLDPAVLQNSVLTTEGDWYNAQKVEDTITKLTNAVGDLQYAFVDVRPRITRNRETHTID
ITYEINEGPRTFVDRIDISGNVRTLDKVIRREMLLSEGDPFNSSKLKRSEQRIKDLGFFE
RVNITTAESSAPDRTVVNVDVAEQSTGEISIGAGFSTSDGPLGDFSIRERNLLGRGQDLR
LGATLSGRRQLYDISFTEPYFMDRDLSAGVDVFRTRYNYQDESSFNEKNTGFALRLGYPL
TERLRQRVYYQLQDTLIEEVPTTASKYIQEQRGERLTSLIGQELTYDVRNSKLTPTEGYF
IRLTNDIAGLGGSVRFLRNKLAGGYYLPLGDDQWVLSTTGEIGYIHGLGKKVDLGDRFFI
GGDTLRGFNTAGIGPRDVSTGDALGGTRYARASVEMSFPFGLPEEFGLLGHAFTDVGTLG
KVDIKDPNVKDDESIRVSIGTGVSWKSPFGPIRLDVALPIRKEGYDKKELVRFSFGTRF