Protein Info for MPMX19_00968 in Azospirillum sp. SherDot2

Annotation: Riboflavin transport system permease protein RibX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 266 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 44 to 55 (12 residues), see Phobius details amino acids 62 to 92 (31 residues), see Phobius details amino acids 108 to 148 (41 residues), see Phobius details amino acids 179 to 203 (25 residues), see Phobius details amino acids 226 to 249 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 84 to 253 (170 residues), 88.5 bits, see alignment E=2.4e-29

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 97% identity to azl:AZL_016450)

Predicted SEED Role

"Hydroxymethylpyrimidine ABC transporter, transmembrane component" in subsystem Thiamin biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (266 amino acids)

>MPMX19_00968 Riboflavin transport system permease protein RibX (Azospirillum sp. SherDot2)
MRSHAKRLPSRPVILLLQLGVLIAFFLIWHVLTDTKILSPFFFGTPGAVLARTWADFASG
VIWYHLGITLLETALAFIIGTVAGIAFGFWFARAPLVSIVFDPYIKAVNALPRVVLAPIF
ALWLGLGIWSKVALGVTLVFFIVFFNVYQGVKEVSPVVLANARMLGASSRDLFRHVYLPS
ALSWVFSSLHTAVGFAMVGAVVGEYLGSAAGLGYRIHQAEGVFDTVGVFSGMLVLTIFVV
LIDAAVTMIEKRLLHWRPQDTGGGQH