Protein Info for MPMX19_00826 in Azospirillum sp. SherDot2

Annotation: Multidrug resistance protein MdtB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1046 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 338 to 356 (19 residues), see Phobius details amino acids 362 to 383 (22 residues), see Phobius details amino acids 389 to 407 (19 residues), see Phobius details amino acids 432 to 454 (23 residues), see Phobius details amino acids 460 to 482 (23 residues), see Phobius details amino acids 534 to 552 (19 residues), see Phobius details amino acids 861 to 878 (18 residues), see Phobius details amino acids 888 to 908 (21 residues), see Phobius details amino acids 914 to 937 (24 residues), see Phobius details amino acids 960 to 981 (22 residues), see Phobius details amino acids 993 to 1017 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1013 (1010 residues), 900.5 bits, see alignment E=6.8e-275

Best Hits

KEGG orthology group: K03296, hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family (inferred from 96% identity to azl:AZL_011100)

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1046 amino acids)

>MPMX19_00826 Multidrug resistance protein MdtB (Azospirillum sp. SherDot2)
MPITRISVDNPVFATMMMVALMVLGLFSYNRLGVDLFPDVDFPVVVVSTAYPGASPETVE
TDITRPVEDAINTIAGIKTLTSRSYEGQSVVIAEFDLKTSSVQALQDVREKVSAIRATFR
DEVKDPQITRFNPDDQPILSIAVTSDLRSLRDLTTLTDQIILKRLQNVRGVGKATIAGGV
KRQILVRLKPEKLEALNVGVDEVIATVTGENQDVPAGTVSGQGRERVVQVEGRVRNPRDL
LDLIVARRGNSPVRLAQVAEVIDGQEEQDSAALLNGNPALAVDVVKVQGANTVEVARGLH
AAIQDLRTNGSLPADVTLAVVRDSSRGITNSLSNVQETLVEGGILTILIVMVFLGSWRST
VITALTLPVAVLGTFGMLAAMGFTLNMMTLMALSLAIGILIDDAIVVRENIMRHLARGQG
HRQAALDGTAEIGLAVLATTLTIVAVFLPVAFMGGIIGRFFLQFGITVSAAVLISLFVSF
TLDPMLSSIWYDPAAHGRHGRSIFGRFAAWFERGFDSVSHGYGRLLRWGLRRRWVVVVVA
LAIFFGSFLLVPRIGVEFVPAADLGEQIVEVESPVGSSLATTTAKTRQVEAAIREFPEIA
YTYSTVNTGVSIGHNRGSIYLRYTPIDQRKRSPNDLAPLLRQRLSAIPGVTIGIAIPGVG
GVQKQIQVSVQGRDIAELDRLSQTVIGAMRAIPGFVDVDSTLKAAKPTLAVRLERDLASD
LGIGTAKVADTLRPLFAGDTVSSWKAPDGESYDVLVRLPEGDRAGRADLDRIHFSGGVDA
NGTPRMIPLSQVAEVVTTLGASQINRRDLQREVNVQANVQGRAAGDAGRDLQAALAKIEL
PPGYRIVFGGSTKDIAETSGYAMQALALAVILIYLILASQFGSFLQPLAIMASLPLSLVG
VFLGLLTAGSTLNIFSAIGFIMLMGLVTKNAILLVDFANQARKRGASLHDALVEAGIIRL
RPIVMTTAAMIFGMLPLALGIGEGAQQRAPMAHAVIGGLLSSTILTLLVVPVALTYLDGL
SRRMKRWFAHSDPDAQQHPAGQHPAE