Protein Info for MPMX19_00710 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 460 transmembrane" amino acids 47 to 73 (27 residues), see Phobius details amino acids 110 to 130 (21 residues), see Phobius details amino acids 149 to 173 (25 residues), see Phobius details amino acids 189 to 211 (23 residues), see Phobius details amino acids 218 to 243 (26 residues), see Phobius details amino acids 256 to 284 (29 residues), see Phobius details TIGR00765: YihY family inner membrane protein" amino acids 34 to 287 (254 residues), 192.2 bits, see alignment E=7.5e-61 PF03631: Virul_fac_BrkB" amino acids 38 to 287 (250 residues), 176.8 bits, see alignment E=3.2e-56

Best Hits

KEGG orthology group: K07058, membrane protein (inferred from 91% identity to azl:AZL_009920)

Predicted SEED Role

"Ribonuclease BN (EC 3.1.-.-)" in subsystem LMPTP YfkJ cluster or tRNA processing (EC 3.1.-.-)

Isozymes

Compare fitness of predicted isozymes for: 3.1.-.-

Use Curated BLAST to search for 3.1.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (460 amino acids)

>MPMX19_00710 hypothetical protein (Azospirillum sp. SherDot2)
MSAPKDNSGREEEERSRILTGLRELGGFFGHSMLRFYNDNCFQTAAALTYTSLLAIVPMM
TIGFAIFSAFPAFSALQLRIQTALVKNLVPEIGDAILEYLGRFMANAGQMPIFGVIGLAV
SAVLLIWTIEGSFATVWRVREPRSYVTRILSFWAVVSLTPLFAGASLSLSSTLWTALEVA
HLEGVVHPLAGIGMLLPFALQLLGCSLLYLIIPNRDVFWLDALCGGAIGSILLEGSKAIF
GWYMREYPAYQTIYGALSVVPIFLFWLYIAWSTVLFGAVVAASLPEWRAGKVTRGGMEGL
LPAQRLALALAVLHELMEASRLGVGMRRRTLVGRVPVGTLLIDGILEQLRDAHWVAHTTR
DAWVVTRDMGEATLLELMKALGIGMRGSVHGLGGLDLPWQERTARLLDAAEARQGDLLNV
PLKSLLNDDLPPEGQPAGQGAGQGAEQGGSGPVPLRAVKK