Protein Info for MPMX19_00656 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 572 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 285 to 305 (21 residues), see Phobius details PF00512: HisKA" amino acids 347 to 415 (69 residues), 77.9 bits, see alignment E=4.7e-26 PF02518: HATPase_c" amino acids 462 to 572 (111 residues), 86.3 bits, see alignment E=2e-28

Best Hits

KEGG orthology group: None (inferred from 76% identity to azl:AZL_009420)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (572 amino acids)

>MPMX19_00656 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MRFRLPSSILAIGLAVTAPLLLFGAVMVWQLDARDRAETEDALQSVAQSLSLAVDRELAS
QLRPLELLASLLQPNADDLRTLYQETTTATHSQPGWLAMGMVDADTGRFVFHTHYPLGVQ
PLPPPRLDEITRHVIESRRATIGGVLPPGGPPGRPSLILRAPILQFDPDRQNDRVRYILS
LALGLEGLSSALRTRDTPPEWTVTVIDPTMLIAARSRDAAAYLGQKVYASLEARIRTGSN
RMFVAQTRDGIEVHSVIHRSSETGWAVVLGVPSALVQEKLNATRMTVVGGAAVACAATLM
LALLVSRAYRRRRSAEEEVRRAREAVLIEQRRRLQSEKDHAEAANRAKSDFLANMSHELR
TPLNAIIGFAEALMSGIFGPSPPKHVEYLTAIHQSGRHLLDLVNELLDMAKIEAGRLELF
PACVALGELLEDCLSLMEALALRKGVALTSGAIASDLQVTVDGVRMRQAVLNVLSNAIKF
TPSGGAVRVEAKPGPGGTGAVIVIADTGVGMSADELVIAMEPFRQVHNYLTKAEAGTGLG
LPLARRFVEAHGGTLTLDSTPGTGTTVTIILP