Protein Info for MPMX19_00613 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 724 transmembrane" amino acids 31 to 53 (23 residues), see Phobius details amino acids 291 to 309 (19 residues), see Phobius details amino acids 315 to 335 (21 residues), see Phobius details PF02743: dCache_1" amino acids 64 to 298 (235 residues), 47.4 bits, see alignment E=5.2e-16 PF13188: PAS_8" amino acids 353 to 413 (61 residues), 30.8 bits, see alignment 6.2e-11 TIGR00229: PAS domain S-box protein" amino acids 353 to 467 (115 residues), 41.3 bits, see alignment E=7.8e-15 PF00989: PAS" amino acids 354 to 404 (51 residues), 32.8 bits, see alignment 1.8e-11 PF08448: PAS_4" amino acids 359 to 419 (61 residues), 24.8 bits, see alignment 6.5e-09 PF00512: HisKA" amino acids 480 to 548 (69 residues), 73.8 bits, see alignment E=2.8e-24 PF02518: HATPase_c" amino acids 595 to 705 (111 residues), 101.6 bits, see alignment E=1e-32

Best Hits

KEGG orthology group: None (inferred from 76% identity to azl:AZL_008960)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (724 amino acids)

>MPMX19_00613 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MPVPGPASPPLPRSTAGLAGALRGRLGSVRFLMTASGLAFILVVNTLIGYGILQGRREAL
DAGERATRDLARMLESQTLRTAFAVDQLLRDLSFALDTLPDGPRRGSTAIHNHLRQRRDN
FAELADLVVVDGDGLALHHSAELPLPTVLLSDRAYFTGPRDGGQDLHVSAAITSRVRPGT
QIIPFSRRWLDTDGGFRGVLVAMVDPTRLAATLESRDIDRKGSVILALGDGTILLERPQG
HGGNNGGPGRLTDWPGVWNALATHDEATIRDAAPGPGGSTDSLVSVRRVQGYPFVIVATL
PVAAALAEWRRDTAAWTSIGTVMTIAIALLTAFVIRQHARRDEDQARLARASRRIRGILD
SMLDAVVTFDTAGRIVTFNRAAEMMFGVPEREMIGQPIEALIPDARGGANDRDLTALRRD
GHAFPVGFTVSDLRLGGGTGAVRPDEPRIHVGVIRDMTRRKQQEAELIASKTQADLANRA
KSEFLANMSHELRTPLNAIIGFAEVLDSEFFGTVNERQKSCITDIHDSGRHLLDIVNAVL
DMSKLEAGQFELCEEAVEVHEAVGQCLIMVRDRAASGGVAIHNEVTAAIATLWVDRRAFK
QVILNLLSNAVKFTPGGGSITITAGMEQDRGFALAVADTGIGIPPDFMADLFQPFRQAEN
AANRRYEGTGLGLSISKNFVDLHGGTLTCRSTPDAGTTMTVRLPAGRVIEQPSRIGSHDP
VPAA