Protein Info for MPMX19_00551 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 352 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 104 to 126 (23 residues), see Phobius details amino acids 147 to 167 (21 residues), see Phobius details amino acids 190 to 211 (22 residues), see Phobius details amino acids 248 to 269 (22 residues), see Phobius details amino acids 281 to 303 (23 residues), see Phobius details TIGR01583: formate dehydrogenase, gamma subunit" amino acids 137 to 337 (201 residues), 148.6 bits, see alignment E=1.2e-47 PF01292: Ni_hydr_CYTB" amino acids 139 to 315 (177 residues), 69.8 bits, see alignment E=1.3e-23

Best Hits

KEGG orthology group: K00127, formate dehydrogenase, gamma subunit [EC: 1.2.1.2] (inferred from 90% identity to azl:AZL_007330)

Predicted SEED Role

"Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)" in subsystem Anaerobic respiratory reductases or Formate hydrogenase (EC 1.2.1.2)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.2.1.2

Use Curated BLAST to search for 1.2.1.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (352 amino acids)

>MPMX19_00551 hypothetical protein (Azospirillum sp. SherDot2)
MEGHRMKTAAAALLLGIGLAVGLALPAAAQSSVRIGGPAAEQQVDRDGPMVPTQIPGQSR
GDSWHAIRLGEQGTVSIPNKQSGVLIQSEGEAWRAVRNGPLSQYGSWVLGGILALLALFF
LVRGRIRIDGEKTGRTIQRFNAFERGVHWMTASSFVVLAISGLNVLYGRHTLLPLIGPEP
FAALSHYGKLAHNFLGFAFILGVALIFVLWVHHNIPSRHDLTWFLKAGGLFSKGVHPPAH
KFNGGQKVIFWSTVVGGAALGFTGVQLIFPFSFATLEEMQLYQLAHAAIAVIMIAIILAH
IYIGSVGMEGAFDAMGDGQVELQWAREHHSLWVEEVTGEKVRHGHHHGTPAE