Protein Info for MPMX19_00498 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 801 transmembrane" amino acids 18 to 39 (22 residues), see Phobius details amino acids 152 to 174 (23 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 229 to 355 (127 residues), 48.1 bits, see alignment E=6.3e-17 PF08447: PAS_3" amino acids 258 to 344 (87 residues), 74.5 bits, see alignment E=1.7e-24 PF08448: PAS_4" amino acids 262 to 352 (91 residues), 28 bits, see alignment E=5.5e-10 PF00989: PAS" amino acids 365 to 412 (48 residues), 23.7 bits, see alignment 1e-08 PF12860: PAS_7" amino acids 368 to 423 (56 residues), 37.7 bits, see alignment 5.1e-13 amino acids 466 to 507 (42 residues), 40.2 bits, see alignment 8.4e-14 PF02518: HATPase_c" amino acids 669 to 777 (109 residues), 91.1 bits, see alignment E=1.6e-29

Best Hits

Predicted SEED Role

"Signal transduction histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (801 amino acids)

>MPMX19_00498 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MTRIVEAWRRIPTVSAKFLLILVPSLVVAVSLFSALFFYDRYKDLQAALREKVATIADIN
AAALSNNLWTFDVQAIRNVIQAIGANRELVCVEVSDDLADGLFAWPGPSCPLSSDANIER
RPVRVQNLQVGTITLHYSHDVVREQLRQEVVNTAVLLLLMLAGTIAAALAALRLTVGRPL
GRLIASILESERGGGHQPVDWRAADELGRVIQAHNAMLARLGQEEAALRKSEQRLALAIT
ATRSSVWDYDLHSGQYWWSKEFPALLGYGPSELRMTAETWSSLLHPDEAERVMAESRRRV
RDRAMAYTAVYRMRRRDGRWAWIEDRATAQRDPDGRARRLTGTMSDVTERVRAELDLAHE
RNVLQVTLDNTDQGIIKVDGDGRVVTANRRAAELLNIPPEVLAGNPRFADVVALQRRQGE
FGEMGDDPDLYLSYGVGAGGSGRGSDAGTDAGFAMPPPGEPAGMIDQPFTFKRRRPDGRI
VEVRTNPLPEGGFVRTLTDVTVEARSAEEIFNAMQELERAYADLKETQANLVQAEKMASL
ALLVAGVAHEINTPIGIAFGCATHLSGRTGMLAEGFERGTMKKSELAAYVATASESSRLI
EQNLTRAAELIQSFKRVAVDQTSEERRRFDLLAYLEEVVTSLGPTLRKSRHRVGIACSPG
IPMDSFPGALSQVVTNLVMNALTHAFPADSRGHMVIDVDEMAEGEVEIRFADDGVGIAAE
NLPKVFEPFFTTRRGSGGSGLGLHIVFNLVTQSLGGRISVDSVPGDGTTFTLRIPKTVIP
PGSPAAATPSPTPVPLETEPA