Protein Info for MPMX19_00424 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 638 TIGR00229: PAS domain S-box protein" amino acids 15 to 131 (117 residues), 45 bits, see alignment E=5.5e-16 amino acids 132 to 252 (121 residues), 53.4 bits, see alignment E=1.4e-18 amino acids 256 to 381 (126 residues), 61.4 bits, see alignment E=4.6e-21 PF08448: PAS_4" amino acids 20 to 122 (103 residues), 29.8 bits, see alignment E=2.4e-10 amino acids 143 to 245 (103 residues), 37.6 bits, see alignment E=9.5e-13 PF00989: PAS" amino acids 21 to 121 (101 residues), 26.8 bits, see alignment E=1.7e-09 amino acids 137 to 243 (107 residues), 34.6 bits, see alignment E=6.8e-12 amino acids 259 to 359 (101 residues), 29.8 bits, see alignment E=2.1e-10 PF08447: PAS_3" amino acids 36 to 103 (68 residues), 43.1 bits, see alignment E=1.6e-14 amino acids 160 to 218 (59 residues), 34 bits, see alignment 1.1e-11 PF13426: PAS_9" amino acids 146 to 245 (100 residues), 23.8 bits, see alignment E=1.8e-08 amino acids 269 to 373 (105 residues), 34.8 bits, see alignment E=6.7e-12 PF13188: PAS_8" amino acids 259 to 312 (54 residues), 29.7 bits, see alignment 1.8e-10 PF00512: HisKA" amino acids 394 to 467 (74 residues), 65.7 bits, see alignment E=1.3e-21 PF02518: HATPase_c" amino acids 513 to 624 (112 residues), 89.8 bits, see alignment E=6.7e-29

Best Hits

KEGG orthology group: None (inferred from 76% identity to azl:AZL_006130)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (638 amino acids)

>MPMX19_00424 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MQDGLSRELRIGGLFQDRRELVAVLSPDGRVRHIGDSAGDLLGYAPETLTGASLGEHIHP
DDVEEAQHRLQLRVNAPAGSSGRAVFRFRHADGGWRWLEVTTRNELADPAIGGLVLNIRD
ISDHIALSERLRASEARYRTLAEAVPVGILQADSAGQVQFANARLAGITGLEPDRLLGRG
WLDAVHPEDRERVAADWRLDSGCDAAATDFRFHDPDGTGADRRVLCQRIRLEDGGTIATI
TDVSEYVLTANALRLSEARNEAVLDTAADAILTVDEAGVLLSFNRAAEAMFGVAAGDLLW
RPLDRLIPLADLREEGGIRLEFAPGQTTALVARDRAAEAERADGIRFPVELSVSASEVEG
RRVYTAILRDVTERRRAEAELLAAKEAAEAGNQAKSTFIATMSHELRTPLNAVIGFSQLL
ETQAGTAVAGGRQNDLVTDCVGAIRQAGEQLLAIIDDILDMARVDAGGFSLVEGSVNLSA
LIERVVADLRFHATRQGVTVDVAADGDLPPIRGDDRRLGQALRNLLSNAIKFSHPGGAVS
LSAGLAADGWVELTVRDRGVGMRQEDVAQALTPFGQIDQTVTRRHEGIGLGLPLALRLVE
AHGGTLTLDSAPGQGCTATIRLPPSRIMTIAELLASMS