Protein Info for MPMX19_00394 in Azospirillum sp. SherDot2

Annotation: 50S ribosomal protein L23

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 105 PF00276: Ribosomal_L23" amino acids 16 to 101 (86 residues), 117.9 bits, see alignment E=1e-38

Best Hits

Swiss-Prot: 76% identical to RL23_RHORT: 50S ribosomal protein L23 (rplW) from Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1)

KEGG orthology group: K02892, large subunit ribosomal protein L23 (inferred from 100% identity to azl:AZL_005830)

MetaCyc: 48% identical to 50S ribosomal subunit protein L23 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L23p (L23Ae)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (105 amino acids)

>MPMX19_00394 50S ribosomal protein L23 (Azospirillum sp. SherDot2)
MSKQSKPAVSQERMYDLILAPVITEKSTLVSEHNQVTFRVPLTASKPEIKAAVEGLFNVK
VTAVNTLVSKGKTKRFRGTIGRRSDFKKAVVTLAEGNKIDVTTGI