Protein Info for MPMX19_00364 in Azospirillum sp. SherDot2

Annotation: Aliphatic amidase expression-regulating protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 427 signal peptide" amino acids 1 to 41 (41 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 53 to 394 (342 residues), 241.2 bits, see alignment E=4e-75 PF13433: Peripla_BP_5" amino acids 54 to 398 (345 residues), 103.1 bits, see alignment E=2.7e-33 PF01094: ANF_receptor" amino acids 76 to 361 (286 residues), 53.5 bits, see alignment E=3e-18

Best Hits

KEGG orthology group: K01999, branched-chain amino acid transport system substrate-binding protein (inferred from 89% identity to azl:AZL_005590)

Predicted SEED Role

"ABC transporter substrate-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (427 amino acids)

>MPMX19_00364 Aliphatic amidase expression-regulating protein (Azospirillum sp. SherDot2)
MKHRHPTASPLAKLLRPAALGATLSVALAAAALTAGPAAAQSAKEPVKFSGAPVRVGEIN
SYTGLPAFTIPYRQGWQLALEEINAEGGVIGCCELQVVSRDDAGKPDDAVRVAQELVTNE
AVDVLAGTYFSHIGLAVADFAARNKMPFVAAEPLTDAITWSKGNRYTFRLRPSTYMQAAM
LVEEAAKLPAKRWATVAPNYEYGQSAVAWFKQLLKEKRPDVEFVAEQWPVQGKLEAGPTV
QALAAAKPDAIFNVTFGADLAKFVREGEGRGLFRNRKVVSLLTGEPEYLEPMKDEAPEGW
IVTGYPWDQIDTPAHKAFVAAYTARFKESPKAGSIVGYITMKAVAAAITKAKSANSEPIV
DALAGLTIDSPVGPVTFRASDHQATMGAYVGTTTVKDGRGTMKDWRYADGANYLPPDDAA
RKMRPAE