Protein Info for MPMX19_00363 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 615 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 63 to 86 (24 residues), see Phobius details amino acids 96 to 117 (22 residues), see Phobius details amino acids 143 to 163 (21 residues), see Phobius details amino acids 190 to 211 (22 residues), see Phobius details amino acids 224 to 250 (27 residues), see Phobius details amino acids 257 to 280 (24 residues), see Phobius details amino acids 313 to 334 (22 residues), see Phobius details amino acids 340 to 367 (28 residues), see Phobius details amino acids 386 to 407 (22 residues), see Phobius details amino acids 413 to 436 (24 residues), see Phobius details amino acids 456 to 476 (21 residues), see Phobius details amino acids 507 to 526 (20 residues), see Phobius details amino acids 546 to 569 (24 residues), see Phobius details amino acids 580 to 604 (25 residues), see Phobius details PF02653: BPD_transp_2" amino acids 9 to 277 (269 residues), 116.8 bits, see alignment E=5e-38 amino acids 333 to 591 (259 residues), 106.9 bits, see alignment E=5.1e-35

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein K01998, branched-chain amino acid transport system permease protein (inferred from 94% identity to azl:AZL_005580)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (615 amino acids)

>MPMX19_00363 hypothetical protein (Azospirillum sp. SherDot2)
MSFLLVQALSGLATAATLFLVSSGLTIVFGVTRIVNFAHGSFYMVGAYAGWSLIERFGGT
PAGFWGSVAAAALAMGVLGAAMEIGLLRRLYRSPELFQLLGTFGVVLVVQDLTAWAWGPE
DLLGRRAPGLKGSIDILDQPFPLYDLVLIGLGPLVLGLLWLLFNRTRWGTLVRAATQDRE
MTSALGVDPARLFTGVLFLGCALAGLGGALQVPRESVTLQMDMAIVVEAFVVVVVGGMGS
LTGAFLASLLIGQLQAFGILVFPQITLVLVFLFMAVVLVLRPHGLLGRAEEVPPTAPATV
TVPLSAGRHAGPWALALLALLAAAPLVAGDYALILLTEVVILALFAASLHLLIGLGGLVS
FGHAAWFGLGAYGSALLVKHLSAPMPLALAGAPVLAGLGALVAGWFCVRRSGLYFAMLTL
AFAQIVWSIAFQWYAVTGGDNGILGVWPPGWAAGKATYYWLTLGLCGGALWLLRRAAFAP
FGYALRAGRDSGLRAESVGIDVRRFQWMAFVLAGTAAGLAGGLYAFAKGSVFPTLLAVPQ
SVDALVMVLMGGIQTVAGPLAGAMVFHLLESEVMSLTDWWRLVLGLIIVALVLVFPKGIV
GFLSGLRSSFGRRRA