Protein Info for MPMX19_00358 in Azospirillum sp. SherDot2

Annotation: Bicarbonate transport ATP-binding protein CmpD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 PF00005: ABC_tran" amino acids 18 to 157 (140 residues), 109.3 bits, see alignment E=1.2e-35

Best Hits

Swiss-Prot: 41% identical to Y3423_BRUAB: Putative ATP-binding protein BruAb2_1123 (BruAb2_1123) from Brucella abortus biovar 1 (strain 9-941)

KEGG orthology group: K02049, sulfonate/nitrate/taurine transport system ATP-binding protein (inferred from 97% identity to azl:AZL_005520)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (257 amino acids)

>MPMX19_00358 Bicarbonate transport ATP-binding protein CmpD (Azospirillum sp. SherDot2)
MRLLVSDLTHRYDDLTVLDGIDLTLAEGEILAVIGPSGCGKSTLLGIAGGIVAPTSGSIR
VEGEVPDGCLNPITFIFQDFALLPWRTVEDNVALVLEHHKLSAAERRERIDSGLRRMGLW
EFRKALPKQLSGGMRQRVGIARALAVRPAMLLLDEPLSALDAQTRELLMDDFLELWRREK
TTALYVTHNLDEALRLADRVCVLSRRPGRIRELVTIEEPRERRQEPSAQAHLAEVRDRLW
HLMKAEAQMADREIARA