Protein Info for MPMX19_00356 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 386 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 48 to 70 (23 residues), see Phobius details amino acids 78 to 98 (21 residues), see Phobius details amino acids 109 to 131 (23 residues), see Phobius details amino acids 138 to 159 (22 residues), see Phobius details amino acids 194 to 213 (20 residues), see Phobius details amino acids 225 to 248 (24 residues), see Phobius details amino acids 254 to 274 (21 residues), see Phobius details amino acids 316 to 338 (23 residues), see Phobius details amino acids 350 to 372 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 205 to 375 (171 residues), 79.3 bits, see alignment E=1.6e-26

Best Hits

Predicted SEED Role

"Pyrimidine ABC transporter, transmembrane component 2" in subsystem Pyrimidine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (386 amino acids)

>MPMX19_00356 hypothetical protein (Azospirillum sp. SherDot2)
MSDSTSDEATNPYRTSLRTAADWGLVAIALPALAALALPVGVQSGAVVGWFGGTMAPLFL
IGVVLAVVAGASAPKRVWGAWVELAGVALAWLLPLHLLNEGLDLSAGWGLWLFLAAATLL
LWRVMGVLAGVPGWTRSVIVPGLFGLGLLVGWEVLVRGFQVPAILLPPPSRIAAALAANA
PVLWDDFRQTVLTSVLRGYIMGCGAGFLVAILADRVPFLARGLLPLGNLASAIPVVGIAP
IMVMWFGFDWQSKAAVIVVMTFFPMLINTLAGLGNSERIQLDLMRSYAAGYGRTLVKLRL
PNALPFLFNGLKINSTLALIGAIVAEFFGTPVVGMGFRISTEVARMNLDIVWATIAVAAL
TGSGLYGALALLERATTAWHPSMRGR